Table 2 Proposed nomenclature for dnmt3, tet and tdg genes.
Species | Name proposed in Ensembl | Name proposed by Simoda et al.(2005) | Name proposed by Campos et al. (2012) | Proposed new nomenclature |
|---|---|---|---|---|
Spotted gar | dnmt3aa | dnmt3a | ||
dnmt3ba | dnmt3bb | |||
dnmt3bb.1 | dnmt3ba | |||
tdg.1 | tdg | |||
Zebrafish | dnmt3aa | dnmt8 | dnmt3a2 | dnmt3aa |
dnmt3ab | dnmt6 | dnmt3a1 | dnmt3ab | |
dnmt3bb.1 | dnmt4 | dnmt3b1 | dnmt3ba | |
dnmt3ba | dnmt7 | dnmt3b2 | dnmt3bba | |
dnmt3bb.2 | dnmt3 | dnmt3b3 | dnmt3bbb1 | |
dnmt3bb.3 | dnmt5 | dnmt3b4 | dnmt3bbb2 | |
tdg1 | tdga | |||
tdg2 | tdgb | |||
Gene loci in Genomicus | Gene loci in NCBI | Proposed new nomenclature | ||
Trout | scaffold_644 | chr.12 | dnmt1a | |
scaffold_1433 | chr.13 | dnmt1b | ||
scaffold_4646 | chr.8 | dnmt3aa | ||
scaffold_7288 | chr.25 | dnmt3ab1 | ||
scaffold_64 | chr.19 | dnmt3ab2 | ||
scaffold_5272 | chr.16 | dnmt3ba1 | ||
scaffold_78452 | chr.9 | dnmt3ba2 | ||
scaffold_3846 | chr.16 | dnmt3bba1 | ||
scaffold_384 | chr.9 | dnmt3bba2 | ||
scaffold_1281 | chr.16 | dnmt3bbb | ||
scaffold_18888 & 2097 | chr.1 | tet1a | ||
scaffold_189 & 12473 | chr.23 | tet1b | ||
scaffold_1163 | chr.19: 4604994..4635364 | tet2a | ||
/ | chr.19: 4726729..4738210 | tet2b | ||
/ | chr.10 | tet2c | ||
scaffold_21498 & 36080 | chr.6 | tet3a | ||
scaffold_605 | chr.11 | tet3b | ||
scaffold_2682 | chr.4 | tdgaa | ||
scaffold_82 | chr.2 | tdgab | ||
scaffold_2682 | chr.4 | tdgba | ||
scaffold_82 | chr.2 | tdgbb |
