Table 1 General attributes of the Devosia genomes analyzed in this study.
Strain | Genome Size (bp) | No. of Contigs | GC Content (%) | CDS | rRNAs (5S, 16S, 23S) | tRNAs | CRISPRs | Source of Isolation | Accession Number | Reference |
|---|---|---|---|---|---|---|---|---|---|---|
Devosia insulae DS-56 | 5,750,119 | 410 | 65.3 | 5632 | 1,1,1 | 50 | — | Soil sample South Korea: Dokdo Island, East Sea of Korea | NZ_LAJE00000000.2 | |
D. limi DSM17137 | 4,297,227 | 25 | 62.7 | 4183 | 2,1,1 | 48 | — | Nitrifying inoculum of activated sludge in Gent, Belgium | NZ_FQVC00000000.1 | |
D. soli GH2-10 | 4,136,371 | 48 | 61 | 4183 | 3,1,1 | 48 | — | Greenhouse soil used to cultivate lettuce in Daejeon City, Korea | NZ_LAJG00000000.1 | |
D. epidermidihirudinis E84 | 3,859,784 | 47 | 61.1 | 3745 | 2,2,2 | 49 | — | Skin of medical leech Hirudo verbana, from Biebertal, Germany | NZ_LANJ00000000.1 | Unpublished data |
D. riboflavina IFO13584 | 5,052,234 | 113 | 61.8 | 5042 | 1,1,1 | 52 | — | Riboflavin rich soil in Rahway, New Jersey | NZ_JQGC00000000.1 | |
D. chinhatensis IPL-18 | 3,497,719 | 98 | 62.3 | 3437 | 2,2,2 | 48 | — | Soil samples from an India Pesticide Limited plant at hexachlorocyclohexane (HCH) dump site, Lucknow, India. | NZ_JZEY00000000.1 | |
D. geojensis BD-c194 | 4,465,063 | 207 | 65.9 | 4432 | 1,1,1 | 49 | — | Diesel-contaminated soil in Geoje, Korea | NZ_JZEX00000000.1 | |
D. crocina IPL-20 | 3,723,990 | 7 | 61.3 | 3706 | 1,1,1 | 45 | 1 | Hexachlorocyclohexane (HCH)-contaminated site in Chinhat, Lucknow, India | NZ_FPCK00000000.1 | This study |
D. psychrophila CGMCC 1.10210 | 4,328,275 | 85 | 61.2 | 4353 | 1,1,1 | 49 | — | Alpine glacier cryoconite, Tyrol, Austria | FOMB00000000.1 | Unpublished data |
D. enhydra ATCC 23634 | 4,220,684 | 5 | 65.6 | 4107 | 2,1,2 | 48 | 1 | Freshwater from the Putah Creek overflow in Davis, Calif, California | NZ_FPKU00000000.1 | Unpublished data |
D. lucknowensis L15 | 3,719,665 | 3 | 62.9 | 3722 | 1,1,1 | 46 | 1 | HCH contaminated pond soil in Ummari village, Lucknow, India | NZ_FXWK00000000.1 | This study |
D. subaequoris HST3-14 | 4,123,118 | 20 | 60.9 | 4165 | 3,1,1 | 48 | — | Sediment sample from Hwasun Beach in Jeju, Republic of Korea | IMG Genome ID 2654587640 | Unpublished data |
Devosia sp. LC5 | 4,202,858 | 47 | 62.3 | 4217 | 2,2,2 | 48 | — | Limestone Capitan Formation at −347 m in Lechuguilla Cave, New Mexico, U.S.A. | JNNO00000000.1 | |
Devosia sp. H5989 | 4,594,249 | 1 | 64.8 | 4574 | 2,2,2 | 51 | — | Human cerebrospinal fluid | NZ_CP011300.1 | |
Devosia sp. Root436 | 3,919,001 | 16 | 63.8 | 3890 | 1,1,1 | 46 | 1 | Root of Arabidopsis thaliana cultivated in greenhouse in Germany;Cologne | LMEM00000000.1 | |
Devosia sp. Root685 | 4,397,456 | 5 | 61.5 | 4228 | 1,1,1 | 48 | — | Root of Arabidopsis thaliana cultivated in greenhouse in Germany;Cologne | LMHK00000000.1 | |
Devosia sp. A16 | 5,032,994 | 1 | 65.8 | 4992 | 2,2,2 | 57 | — | Wheat field, China; Nanjing | NZ_CP012945.1 | |
Devosia sp. 17-2-E-8 | 4,684,238 | 124 | 64 | 4584 | 2,1,1 | 49 | — | Alfalfa soil sample that was enriched with F. graminearum-infested moldy corn for 6weeks, Canada;Ontario | JQGB00000000.1 | |
Devosia sp. Root105 | 5,850,117 | 21 | 65.4 | 5737 | 1,1,1 | 51 | — | Root of Arabidopsis thaliana cultivated in greenhouse in Germany;Cologne | LMCR00000000.1 | |
Devosia sp. Root413D1 | 5,851,361 | 14 | 65.4 | 5716 | 1,1,1 | 50 | — | Root of Arabidopsis thaliana cultivated in greenhouse in Germany;Cologne | LMEA00000000.1 | |
Devosia sp. Root635 | 3,816,628 | 24 | 64.1 | 3748 | 1,1,1 | 48 | 1 | Root of Arabidopsis thaliana cultivated in greenhouse in Germany;Cologne | LMGZ00000000.1 | |
Devosia nanyangense DDB001 | 4,669,456 | 95 | 64 | 4578 | 1,1,1 | 49 | — | Mycotoxin contaminated Wheat field soil in Nanyang, China | CCAO000000000.1 | |
Devosia sp. S37 | 3,878,148 | 151 | 64.1 | 3878 | 1,1,1 | 55 | — | Oil palm rhizospheric soil, Temerloh, Pahang, Malaysia | LVVY00000000.1 | Unpublished data |
Devosia sp. Leaf64 | 4,244,488 | 24 | 60.5 | 4206 | 1,1,1 | 48 | — | Arabidopsis thaliana leaf natural site, Switzerland; Zurich | LMLO00000000.1 | |
Devosia sp. Leaf420 | 4,219,583 | 16 | 60.7 | 4128 | 1,1,1 | 50 | — | Arabidopsis thaliana leaf natural site, Switzerland; Zurich | LMQU00000000.1 | |
Devosia sp. YR412 | 3,831,215 | 11 | 62.5 | 3755 | 2,2,2 | 51 | — | Populus root and rhizosphere microbial communities from Tennessee, USA | FOFL00000000.1 | Unpublished data |
Devosia sp. I507 | 4,005,916 | 1 | 61.9 | 4021 | 2,2,2 | 48 | — | Pit mud, Indian ocean | NZ_CP026747.1 | Unpublished data |
