Table 2 Table represents putative translated junction for identified fusions a reading frame of their parent genes. Highlighted events are identified in multiple proteomics samples.
GeneA | GeneB | Putative translated fusion peptide | Junction peptide from MS data | GeneA and its reading frame | GeneB and its reading frame |
|---|---|---|---|---|---|
GDI2 | FAM208B | IIVQNGKVIGVKSEGENLLRKGGHTEIEPQHF | VIGVKSEGENLLR | intact | intact |
ENSG00000225302 | HSPA12A | AKNKMKCDSRWEIAASETAPTSAYSSPARSLGD | WEIAASETAPTSAYSSPAR | intact | intact |
ENSG00000212127 | PRH1-PRR4 | LPAGTCCIYSRVEVFTDVNYEDFTFTIPGKSQ* | LPAGTCCIYSRVEVFTDVNYEDFTFTIPGK | intact | intact |
MAP1B | DDX3× | EKIERTTKSPSDSGYSYRPCVVYGGADIGQQIR | SPSDSGYSYRPCVVYGGADIGQQIR | intact | intact |
YLPM1 | ZNF207 | MVPPYQGGPPRPPMGMRPPPPLPPPPPVIKPQT | PPYQGGPPRPPMGMRPPPPLPPPPPVIKPQT | intact | intact |
KLHL8 | SMARCAD1 | LLRFYENGELCDVTLKLIESTSTMDGAIAAAL | FYENGELCDVTLKLIESTSTMDGAIAAAL | intact | intact |
SLC7A5P2 | PTPRD | CPVPEEAAKLVACHSVPPPRFTRTPVDQTGVSG | LVACHSVPPPRFTR | intact | intact |
CSAD | ARHGEF12 | CA*WKEMSIPLKSSFLLWQDLICRMAASVKEQS | SSFLLWQDLICR | intact | no |
GABRB2 | ZNF451 | MNIDIASIDMVSEVNMNVTVMITWVPKILQ*E | NIDIASIDMVSEVNMNVTVMITWVPK | intact | no |
PPP2R4 | NPAP1 | IDTSDMNTTPPSKTVILQSGQGLRLALV*ESCF | IDTSDMNTTPPSKTVILQSGQGLR | intact | no |
ACAD10 | MAPKAPK5 | QGDLMTPQFTPYYVAPQGKQAPHMRNKLES*PN | QGDLMTPQFTPYYVAPQGKQAPHMR | intact | no |
EIF4G3 | FRMPD2 | RSILNKLTPQMFNQLMKHLPGARHYSRPPSMLR | LTPQMFNQLMKHLPGAR | intact | no |
OPCML | NTM | KAMDNVTVRQGESATLSISQNCRDFFRYLH**R | QGESATLSISQNCRDFFR | intact | no |
MALAT1 | MLL2 | RCEPPRLAGSPFFLTPTNLPSTISPGLGSLPSK | CEPPRLAGSPFFLTPTNLPSTISPGLGSLPSK | intact | no |
WDR6 | CBFA2T3 | SGPGGVVACLEISAAPSGICVCGVARGLASVRV | SGPGGVVACLEISAAPSGICVCGVARGLASVR | intact | no |
WDR48 | AATF | LFKDKGGPEFSSALKNMNLGGLLLQALLEYWPR | GGPEFSSALKNMNLGGLLLQALLEYWPR | intact | no |
GRAMD2 | HSP90AA1 | PEGLKGEEIKKCGREGVNLWVVEQKLSYT*KKT | CGREGVNLWVVEQK | intact | no |
SYNE1 | SSBP1 | PPKEPMDMEAQLMDCQASETWHINM*KRGKLKR | PPKEPMDMEAQLMDCQASETWHINM | intact | no |
NUMB | ARHGAP24 | YLPGLSKPLPYCEELFYILFSMQVKTHNIDFIN | YLPGLSKPLPYCEELFYILFSMQVKTHNIDFIN | intact | no |
SH3PXD2A | BCLAF1 | MGRASHLVHDMQRLPEDQEALDYFSDKESGKQK | ASHLVHDMQRLPEDQEALDYFSDK | no | intact |
ZNF292 | ARNT2 | SQGLSIQSLRNTIGLLIHIFNKHNDKHKAHLIR | SQGLSIQSLRNTIGLLIHIFNK | no | intact |
NCKAP1 | KIAA1109 | RSIVGMTMYNQATQEIALAADHHSKHEAQRHFL | SIVGMTMYNQATQEIALAADHHSK | no | intact |
USP11 | ATL2 | ARVGENVHCGPAKAGENYEDDDLVNSDEVMKK | VGENVHCGPAKAGENYEDDDLVNSDEVMK | no | intact |
DPP6 | MLLT3 | RRRTWTVSILAWLCTPEKPSKDSREHKSAFKE | TWTVSILAWLCTPEKPSKDSR | no | intact |
USP34 | DDHD1 | MRKCVVQLCQGGWLIGQKMDQGRIIKNTAM*VL | CVVQLCQGGWLIGQKMDQGR | no | intact |
FAM185A | FBXL13 | HCQKNHTAKTSPNSWPTGNITLQSKMGNITVGM | TSPNSWPTGNITLQSKMGNITVGM | no | intact |
NMD3 | MKLN1 | ADDYNCKQC*RLALGSEDGLDFYYSSKQHAQKM | LALGSEDGLDFYYSSK | no | intact |
ENSG00000178440 | TIMM23 | TGEVLRRSYTKGSKVLDTDEFILPTGANKTRG | GSKVLDTDEFILPTGANK | no | intact |
ENSG00000147421 | PCDH9 | QVMKWKASLTAVISSDTLISHPLPLVQPQDEF | ASLTAVISSDTLISHPLPLVQPQDEF | no | intact |
GRIA4 | ENSG00000234873 | LDQ*QKQVTHQGTGQPWSWSWLVLLCPPPRGE | QVTHQGTGQPWSWSWLVLLCPPPRGE | no | intact |
FAM226B | NAP1L2 | SSLFSSPVASMSSSSSSSFTATERNWGGCHSLW | SSLFSSPVASMSSSSSSSFTATER | no | intact |
