Table 3 Fusion partners that are also in physical proximity.
Fusion_Pair | Fusion breakpoint1 | Fusion breakpoint2 | Chromatin Interacting locus1 | Chromatin Interacting locus2 | Chromatin Interaction identified in cell line |
|---|---|---|---|---|---|
ENSG00000249456_ZRANB1 | chr10:126631875 | chr10:126628942 | chr10:126640000-126680000 | chr10:126600000-126640000 | A549, NCI-H460, RPMI-7951, T47D |
ZFYVE9_ENSG00000154222 | chr1:52815403 | chr1:52805352 | chr1:52800000-52840000 | chr1:52760000-52800000 | A549, RPMI-7951, SK-MEL-5, T47D |
ENO2_ATN1 | chr12:7033739 | chr12:7031013 | chr12:7040000-7080000 | chr12:7000000-7040000 | A549, RPMI-7951, SK-MEL-5, G401 |
ENSG00000225065_NCOA6 | chr20:33303168 | chr20:33302393 | chr20:33320000-33360000 | chr20:33280000-33320000 | NCI-H460, RPMI-7951, T47D, G401 |
FAM177A1_PPP2R3C | chr14:35557754 | chr14:35548998 | chr14:35560000-35600000 | chr14:35520000-35560000 | A549, NCI-H460, G401 |
ENSG00000227733_HYDIN | chr1: 146126403 | chr16:71196632 | chr1:146100000-146140000 | chr16:71160000-71200000 | NCI-H460, T47D, G401 |
GDI2_FAM208B | chr10:5798575 | chr10:5815804 | chr10:5800000-5840000 | chr10:5760000-5800000 | A549, Caki2 |
SLC7A6_SLC7A6OS | chr16:68338040 | chr16:68333926 | chr16:68320000-68360000 | chr16:68280000-68320000 | A549, RPMI-7951 |
RENBP_SSR4 | chrX:153062912 | chrX:153208306 | chrX:153160000-153200000 | chrX:153080000-153120000 | A549, SK-N-MC |
