Table 4 Re-docking validation for fragment docking using AutoDock.
From: Click Inspired Synthesis of Novel Cinchonidine Glycoconjugates as Promising Plasmepsin Inhibitors
Molecular fragment | Binding energy (K cal/ mol) | Number of H-bonds | Amino acid | |
---|---|---|---|---|
Docking | Re-docking | |||
Cm | −6.1 | −6.1 | 2 | VAL78 |
THR217 | ||||
3a | −5.35 | −5.4 | 1 | ASP34 |
3b | −5.46 | −5.46 | 2 | ASP214 |
SER79 | ||||
3c | −4.9 | −5 | 2 | PHE 16 |
ASP303 | ||||
3d | −4.9 | −4.9 | 2 | VAL78 |
SER79 | ||||
3f | −5.8 | −5.76 | 2 | ASP214 |
SER79 | ||||
3g | −5.2 | −5.2 | 2 | GLY216 |
SER218 | ||||
3h | −5.23 | −5.23 | 2 | SER79 |
ASP214 | ||||
3i | −4.71 | −4.7 | 2 | VAL78 |
ASP34 | ||||
3j | −5.39 | −5.39 | 1 | VAL78 |