Table 2 Patients and the tumor characteristics of CRC adenocarcinoma in FFPE, fresh tissue and plasma studies. *N/A: Not applicable.

From: Crosstalk between DNA methylation and gene expression in colorectal cancer, a potential plasma biomarker for tracing this tumor

Type

Biological FFPE tissue validation

Biological fresh tissue validation

Tissue expression

Plasma study

Cases

Control

Cases

Control

Cases

Control

Cases

Control

Number

(N = 39)

(N = 47)

(N = 28)

(N = 26)

(N = 33)

(N = 35)

(N = 22)

(N = 20)

Gender

Male

23 (59%)

27 (57%)

19 (68%)

18 (69)

19 (57%)

17 (48%)

13 (59%)

11(55%)

Female

16 (41%)

20 (43%)

9 (32%)

8 (31)

14 (43)

18 (52%)

9 (41%)

9 (45%)

Age at Diagnosis (Year)

Median

58

61

67

59

59

56

67

56

Range

[24–85]

[24–85]

[44–82]

[45–84]

[24–85]

[35–77]

[44–82]

[45–84]

Tumor site

Anal

0

0

0

0

0

0

0

Rectum

3 (8%)

4 (8%)

10 (36%)

9 (35%)

2 (6%)

0

8 (36%)

Sigmoid

20(51%)

24 (51%)

6 (21%)

12 (46%)

18 (54%)

21 (60%)

4 (18%)

Transverse colon

0

0

0

0

0

0

0

Descending colon

4 (10%)

5 (11%)

1 (3%)

0

3 (9%)

7 (20%)

1 (5%)

Ascending colon

7 (18%)

7 (15%)

3 (11%)

1 (4%)

5 (15%)

0

3 (14%)

Cecum

2 (5%)

2 (4%)

8 (29%)

4 (15%)

2 (6%)

0

6 (27%)

Entire colon

3 (8%)

5 (11%)

0

0

3 (9%)

7 (20%)

0

TNM stage

I

7 (18%)

N/A

6 (18%)

N/A

IIA

8 (21%)

N/A

6 (18%)

N/A

IIB

2 (5%)

N/A

2 (6%)

N/A

IIC

1 (2%)

N/A

1 (3%)

N/A

IIIA

2 (5%)

N/A

2 (6%)

N/A

IIIB

10 (26%)

N/A

7 (21%)

N/A

IIIC

9 (23%)

N/A

9 (27%)

N/A

IVA

0

N/A

0

N/A

IVB

0

N/A

0

N/A

Tumor size

≥4

15 (39%)

N/A

10 (30%)

N/A

4.1–7.9

20 (51%)

N/A

20 (61%)

N/A

8–11.9

2 (5%)

N/A

1 (3%)

N/A

≤12 cm

2 (5%)

N/A

2 (6%)

N/A

Mean of Cq

29.7

35.5

29.7

35

32.5

27.8

36.3

0

KRAS mutation

19 (49%)

9 (32%)

12 (36%)

6 (27%)

BRAF mutation

9 (23%)

3 (11%)

5 (15%)

2 (9%)

Diagnostic

Sensitivity

87%

82%

41%

Specificity

100%

92%

100%