Table 1 Proportion of subtype/CRF in the Nigerian dataset of previously published and new sequences collected in the period 1999–2013.
Subtype/CRFa | Nc | % | Geographyd | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Southwest | North Central | North East & North West | ||||||||||||||||||
LAG | IBA | OND | OSO | OYO | ENU | Total | ABV | JOS | MIN | NC | Total | KAD | DAM | MAI | KAN | YOL | Total | |||
A1 | 24 | 1.7 | 9 | 2 | 0 | 0 | 0 | 0 | 11 | 7 | 5 | 0 | 0 | 12 | 0 | 0 | 1 | 0 | 0 | 1 |
B | 4 | 0.3 | 1 | 1 | 0 | 0 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
C | 14 | 1.0 | 2 | 1 | 0 | 0 | 2 | 0 | 5 | 6 | 2 | 0 | 1 | 9 | 0 | 0 | 0 | 0 | 0 | 0 |
CRF02_AG | 636 | 44.1 | 176 | 27 | 0 | 1 | 18 | 0 | 222 | 284 | 94 | 0 | 10 | 388 | 13 | 0 | 11 | 2 | 0 | 26 |
CRF06_cpx | 64 | 4.4 | 18 | 2 | 0 | 0 | 0 | 0 | 20 | 36 | 6 | 0 | 1 | 43 | 0 | 0 | 1 | 0 | 0 | 1 |
CRF09_cpx | 1 | 0.1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CRF11_cpx | 4 | 0.3 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
CRF18_cpx | 1 | 0.1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CRF19_cpx | 1 | 0.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
CRF43_02G | 236 | 16.4 | 33 | 11 | 1 | 0 | 0 | 0 | 45 | 138 | 34 | 0 | 0 | 172 | 8 | 0 | 8 | 3 | 0 | 19 |
CRF49_cpx | 1 | 0.1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
D | 9 | 0.6 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 4 | 2 | 0 | 0 | 6 | 0 | 0 | 1 | 0 | 0 | 1 |
G | 119 | 8.3 | 24 | 6 | 0 | 0 | 0 | 0 | 30 | 55 | 25 | 1 | 0 | 81 | 4 | 1 | 3 | 0 | 0 | 8 |
URFb | 328 | 22.7 | 78 | 13 | 0 | 0 | 2 | 1 | 94 | 163 | 46 | 0 | 3 | 212 | 9 | 0 | 11 | 0 | 2 | 22 |
Total | 1442 | 100 | 346 | 64 | 1 | 1 | 22 | 1 | 435 | 697 | 216 | 1 | 15 | 929 | 34 | 1 | 35 | 5 | 2 | 78 |
