Table 3 SNPs distribution in different combinations across A and B genomes of peanut.
Genome | SNP type | C-76- FI Vs Val-C-FI | C-76-FI Vs C-76 -DI | Val-C-FI Vs Val-C-DI | C-76-DI Vs Val-C-DI | Total |
|---|---|---|---|---|---|---|
A | 3‘UTR’ variant | 17 | 0 | 13 | 22 | 52 |
5,‘UTR’ variant | 11 | 0 | 4 | 5 | 20 | |
Missense variant | 43 | 1 | 21 | 51 | 116 | |
Stop gained | 1 | 0 | 0 | 1 | 2 | |
B | 3‘UTR’ variant | 15 | 0 | 8 | 24 | 47 |
5‘UTR’ variant | 13 | 0 | 17 | 15 | 45 | |
Missense variant | 81 | 1 | 55 | 84 | 221 | |
Splice region variant | 1 | 0 | 0 | 0 | 1 | |
Stop gained | 3 | 0 | 1 | 4 | 8 | |
Start lost | 0 | 0 | 0 | 1 | 1 |
