Table 4 SNPs validation using qRT-PCR.
S.No | Gene Id | Locus | Allele | Primer set | C-76 | Val-C |
|---|---|---|---|---|---|---|
1 | Araip.1ZJ86 | Araip.B05:9584285–9586662 | T/A | Allele1 | + | + |
Allele2 | − | − | ||||
2 | Araip.XI9UR | Araip.B01:121358660–121360450 | C/G | Allele1 | − | − |
Allele2 | + | + | ||||
3 | Araip.L4UC8 | Araip.B04:128351613-128357097 | G/A | Allele1 | − | − |
Allele2 | + | + | ||||
4 | Araip.J8WWD | Araip.B05:149331140-149333249 | C/G | Allele1 | − | − |
Allele2 | + | + | ||||
5 | Araip.AD1F5 | Araip.B05:149331140-149333249 | T/G | Allele1 | − | − |
Allele2 | + | + | ||||
6 | Araip.9WJ7K | Araip.B07:7841693-7846317 | A/T | Allele1 | − | − |
Allele2 | + | + | ||||
7 | Aradu.XF675 | Araip.B07:7841693-7846317 | G/A | Allele1 | − | − |
Allele2 | + | + | ||||
8 | Aradu.03ENGI (1 & 2) | Aradu.A02:84440367-84441960 | T/A | Allele1 | ++ | + |
Allele2 | − | − | ||||
9 | Aradu.03ENG II(3 & 4) | Aradu.A02:84440367-84441960 | T/A | Allelle1 | − | − |
Allele2 | + | + | ||||
10 | Araip.G4DKZ | Araip.B03:109942672 | C/T | Allele1 | − | − |
Allele2 | + | + | ||||
11 | Aradu.77ZLW | Aradu.A10:5944901-5947659 | C/T | Allele1 | + | + |
Allele2 | − | − | ||||
12 | Araip.3WN1Q | Araip.B01:23319799-23321171 | A/T | Allele1 | − | + |
Allele2 | − | − | ||||
13 | Araip.26ZIU | Araip.B01:123879553-123882176 | T/A | Allele1 | + | + |
Allele2 | − | − | ||||
14 | Araip.6FC6W | Araip.B09:115020963-115024147 | G/T | Allele1 | + | + |
Allele2 | − | − | ||||
15 | Araip.982E5 | Araip.B06:1022422-1025983 | T/G | Allele1 | − | − |
Allele2 | + | + | ||||
16 | Aradu.96ASX | Aradu.A02:1911658-1916520 | T/A | Allele1 | − | − |
Allele2 | + | + | ||||
17 | Aradu.CVI2N | Aradu.A03:28240-34249 | A/G | Allele1 | − | − |
Allele2 | + | + | ||||
18 | Aradu.618YE | Aradu.A10:95832914-95833751 | A/C | Allele1 | − | − |
Allele2 | + | + | ||||
19 | Aradu.S1EHV | Aradu.A04:30101833-30104322 | G/T | Allele1 | + | + |
Allele2 | − | − | ||||
20 | Aradu.AGI8J | Aradu.A08:34838458-34855099 | G/A | Allele1 | + | + |
Allele2 | − | − | ||||
21 | Aradu.R479P | Aradu.A05:18360103 | A/G | Allele1 | − | − |
Allele2 | + | + | ||||
22 | Araip.JH8FI | Araip.B04:127200939-127205614 | C/G | Allele1 | + | + |
Allele2 | − | − | ||||
23 | Araip.JH8FI | Araip.B04:127200939-127205614 | C/G | Allele1 | − | − |
Allele2 | + | + |
