Table 4 Validation of P-Net patients’ ranking using a non parametric test on the different datasets. Results of the random label permutation test to assess the significance of patients ranking. RWK stands for Random Walk Kernel, Diff. score for Differential score, Dnorm score for Differential normalized score. For the Pancreatic cancer dataset, results with different training set sizes are shown.
From: Network modeling of patients' biomolecular profiles for clinical phenotype/outcome prediction
Dataset | P-Net methods | p-value (ranking) |
---|---|---|
Pancreatic - 16 patients | RWK8, NN score | 0.0010 |
Pancreatic - 18 patients | RWK8, NN score | 0.0060 |
Pancreatic - 20 patients | RWK8, NN score | 0.0120 |
Pancreatic - 24 patients | RWK8, NN score | 0.0060 |
Pancreatic - 28 patients | RWK8, NN score | 0.0170 |
Breast | RWK1, Dnorm score | 0.0000 |
Colorectal | RWK1, Diff. score | 0.0490 |
Colon | RWK1, Diff. score | 0.0440 |