Table 2 Key driver genes.

From: Transcriptomic and computational analysis identified LPA metabolism, KLHL14 and KCNE3 as novel regulators of Epithelial-Mesenchymal Transition

 

Topological features

Expression features

Symbol

Functional Annotation

Local hub

Bottleneck

DEG

Significant

GSTM3

Plays a role in cell protection against oxidative damages; involved in tumor progression37,52

x

x

x

x

GSTA1

Takes part in detoxification process; associated with tumor progression69,70,71

x

   

GSTM1

Important role in Phase II detoxification process37,72

x

 

x

x

TFF3

Maintains the integrity of the gastrointestinal tract; promote proliferation, invasion and EMT73,74,75

  

x

x

ITGA2

Regulates cytoskeletal organization and cellular motility; implicated in stem cell differentiation76,77

 

x

x

x

ERBB3

Linked to cancer etiology and progression; its role in EMT is still under debate78,79

 

x

x

x

LPIN1

Involved in phospholipid and triacylglycerol synthesis; catalyzes the dephosphorylation of phosphatidate to diacylglycerol (DAG)80,81

x

   

LPIN2

Plays central role in lipid metabolism; catalyzes the dephosphorylation of phosphatidate to diacylglycerol (DAG)80,81

x

   

LPIN3

Has a role in lipid metabolism; expressed in the gastrointestinal tract and liver38,80,81

x

x

  

PLPP2

Involved in lysophosphatidic acid degradation38,41

x

  

x

KCNE3

Modulates the voltage-gated potassium (Kv) channels gating56,82

  

x

x

KLHL14

Participates in extracellular communication/interaction, cell morphology and actin binding regulation43

  

x

x

  1. List of genes involved in the regulation of EMT process in mAEC and eAEC. For each of these genes the main biological functions have been reported. The table also shows the topological and the expression features identified from computational analyses.