Table 2 Statistical association between DArTseq SNP markers and resistance to L. maculans in a doubled haploid population derived from the RP04/Ag-outback.
Phenotyping environment | DArTseq marker | Chromosome | Physical position of marker on the Darmor sequence | Probability of association | LOD Score | Genotypic variation explained (%) | Allelic effect |
|---|---|---|---|---|---|---|---|
Field evaluation in disease nursery (Wagga Wagga)-site 1 | 5031260_16:C > A | A01 | 6158899 | 0.00 | 4.16 | 5.39 | −0.29 |
3118601_36:G > A | A06 | 20027453 | 0.00 | 3.16 | 4.83 | 0.20 | |
3091258_29:G > A | A10 | 11581532 | 0.00 | 3.18 | 5.14 | 0.22 | |
Field evaluation in disease nursery (Wagga Wagga)-site II | 5238867_9:G > T | A03 | 14295938 | 0.00 | 4.13 | 2.46 | 0.62 |
3077572 | A05 | 2448983 | 0.00 | 4.97 | 3.08 | −0.78 | |
3120357_8:G > T | C04 | 16700301 | 0.00 | 3.90 | 2.29 | −0.69 | |
3134332 | C06 | 956033 | 0.00 | 4.03 | 2.45 | −0.72 | |
4116149_16:G > A | C08 | 36631450 | 0.00 | 3.92 | 2.36 | 0.66 | |
Field evaluation in disease nursery (Green Lake)-site III | 3147873_8:C > T | A10 | 526147 | 0.00 | 4.35 | 4.96 | −1.09 |
5034116_49:T > G | A10 | 14099074 | 0.00 | 3.73 | 3.95 | −0.62 | |
Ascospore shower test with pathotypes from mixed stubble | 3196349_56:A > C | A01 | 4839375 approx | 0.00 | 4.63 | 12.56 | −0.85 |
100027433_25:T > C | A03 | 13164795 | 0.00 | 2.31 | 5.88 | 0.51 | |
3121801_61:A > T | A04 |  | 0.00 | 3.94 | 10.84 | 0.63 | |
5756681_34:A > T | A07 | 19373605 | 0.00 | 3.09 | 8.20 | 0.58 | |
3087797_27:C > G | C03 | 2032503 | 0.00 | 4.15 | 11.44 | −0.92 | |
3133149_28:G > A | C04 | *30423579 | 0.00 | 3.70 | 9.93 | −0.74 | |
Cotyledon test with IBCN17 isolate | 3076956_16:G > A | A07 | 15907056 | 0.00 | 77.37 | 81.88 | 0.68 |
3099202_14:C > A | A09 | 15423340 | 0.00 | 3.17 | 8.25 | 0.09 | |
Cotyledon test with IBCN76 isolate | 100027433_25:T > C | A03 | 13164795 | 0.01 | 2.26 | 4.73 | 0.06 |
3076956_16:G > A | A07 | 15907056 | 0.00 | 50.54 | 63.44 | −0.59 | |
100030684_5:C > T | C02 | 3442359 | 0.00 | 3.02 | 6.66 | −0.08 | |
3104923_39:A > T | C03 | 3559949 | 0.00 | 3.73 | 9.21 | 0.13 | |
3090406_36:C > G | C05 | 36183396 | 0.00 | 3.68 | 8.11 | 0.09 |
