Table 1 Summary of Gene Ontology (GO) Biological Process terms identified.

From: Heterogeneity at the invasion front of triple negative breast cancer cells

goId

goName

countDE

countAll

ratio (DE/All)

pv_weight

GO:0030198

extracellular matrix organization

19

191

0.1

0.00002

GO:0007156

homophilic cell adhesion via plasma membrane adhesion molecules

9

51

0.18

0.000027

GO:0010811

positive regulation of cell-substrate adhesion

8

42

0.19

0.000043

GO:0001503

ossification

17

199

0.09

0.00038

GO:0030514

negative regulation of BMP signaling pathway

5

27

0.19

0.00141

GO:0071398

cellular response to fatty acid

5

30

0.17

0.0023

GO:0099131

ATP hydrolysis coupled ion transmembrane transport

5

30

0.17

0.0023

GO:0050868

negative regulation of T cell activation

6

51

0.12

0.00525

GO:0015909

long-chain fatty acid transport

5

32

0.16

0.0054

GO:1901655

cellular response to ketone

5

41

0.12

0.00914

GO:0001525

angiogenesis

16

237

0.07

0.00998

GO:0050679

positive regulation of epithelial cell proliferation

8

95

0.08

0.01038

GO:0048010

vascular endothelial growth factor receptor signaling pathway

5

45

0.11

0.01345

GO:0055114

oxidation-reduction process

25

405

0.06

0.01502

GO:0009636

response to toxic substance

8

103

0.08

0.01882

GO:0032963

collagen metabolic process

8

79

0.1

0.01982

GO:0042542

response to hydrogen peroxide

6

61

0.1

0.02195

GO:0042493

response to drug

14

205

0.07

0.02234

GO:0048660

regulation of smooth muscle cell proliferation

6

72

0.08

0.02632

GO:0009991

response to extracellular stimulus

17

215

0.08

0.02697

GO:1902600

hydrogen ion transmembrane transport

5

30

0.17

0.02705

GO:0002695

negative regulation of leukocyte activation

10

82

0.12

0.03308

GO:0001764

neuron migration

6

62

0.1

0.03354

GO:0046578

regulation of Ras protein signal transduction

7

82

0.09

0.03844

GO:1903409

reactive oxygen species biosynthetic process

5

50

0.1

0.03866

GO:0002237

response to molecule of bacterial origin

11

171

0.06

0.04151

GO:0050770

regulation of axonogenesis

6

68

0.09

0.04315

GO:0007266

Rho protein signal transduction

5

63

0.08

0.04909

  1. Gene ontology ID (goId) and name (goName) are indicated in the first two columns respectively.
  2. The third column (countDE) indicates the number of genes identified in the microarray that have been shown to be correlated with the biological process while the fourth column (countAll) indicates the total number of genes known to be correlated with the biological process. The fifth column shows the ratio of detected genes to all genes and the last column shows the corrected p-values.
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