Table 2 The top five significant SNPs detected in GWAS analysis ranked with respect to level of significance. Ssa = Salmo salar chromsomes; Pos(bp) = Physical position of SNP; A1 & A2 = Minor & major alleles, respectively; MAF = Minor allele frequency; α = Allele substitution effect; SE = Standard error; P = Significance value; \(varP\) = Phenotypic variance explained; \(varG\,\)(%) = Proportion of genotypic variance explained; \(varP\)(%) = Proportion of phenotypic variance explained.

From: Genome-wide association mapping and accuracy of predictions for amoebic gill disease in Atlantic salmon (Salmo salar)

SNP-ID

Ssa

Pos(bp)

A1

A2

MAF

α

SE

P

\({\boldsymbol{V}}{\boldsymbol{a}}{\boldsymbol{r}}{\boldsymbol{P}}\)

\({\boldsymbol{v}}{\boldsymbol{a}}{\boldsymbol{r}}{\boldsymbol{G}}\,\)(%)

\({\boldsymbol{v}}{\boldsymbol{a}}{\boldsymbol{r}}{\boldsymbol{P}}\) (%)

AX-88266207

02

1967633

A

B

0.165

−0.265

0.052

4.12E-07

0.019

32.6

3.63

AX-87970438

05

76572428

A

B

0.184

−0.228

0.050

5.73E-06

0.016

26.3

2.92

AX-88137791

02

2059898

B

A

0.184

−0.208

0.047

7.96E-06

0.013

22.0

2.45

AX-87975635

01

52913027

A

B

0.314

0.159

0.037

2.08E-05

0.011

18.4

2.05

AX-87017245

01

53002456

A

B

0.313

0.159

0.037

2.13E-05

0.011

18.3

2.04

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