Table 1 Haplotype diversity estimates from PredictHaplo results.

From: Author Correction: A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing

Participant

PR/RT

int

env

Viral Load (copies/mL)

ARV Exposure

ARV Regimen Type

Number of Haplotypes

Haplotype Diversity

Number of Haplotypes

Haplotype Diversity

Number of Haplotypes

Haplotype Diversity

8

NA

NA

1

0

NA

NA

 

E

2 NRTI+1 ENH+1 INSTI

9

NA

NA

5

0.066

11

0.038

476

E

 

12

1

0

4

0.727

2

0.393

77

E

2 NRTI+1 NNRTI

13

NA

NA

1

0

2

0.302

 

N

 

16

3

0.33

1

0

3

0.415

 

E

 

18

NA

NA

1

0

NA

NA

119149

E

 

19

2

0.436

2

0.499

4

0.721

244

N

 

20

2

0.479

1

0

2

0.281

5663

E

1 NRTI+1 PI+1 ENH

23

3

0.352

2

0.484

NA

NA

927

E

2 NRTI+1 ENH+1 INSTI

25

1

0

1

0

NA

NA

 

E

2 NRTI+1 ENH+1 INSTI

26

2

0.452

2

0.466

NA

NA

 

N

 

27

1

0

1

0

NA

NA

11

E

1 PI+1 ENH

29

2

0.464

2

0.25

5

0.62

1

E

2 NRTI+1 ENH+1 INSTI

30

2

0.441

3

0.579

1

0

625

E

 

31

3

0.64

3

0.526

2

0.312

 

E

2 NRTI+1 INSTI

32

2

0.146

2

0.339

2

0.498

 

E

2 NRTI+1 NNRTI+1 PI+1 ENH

33

1

0

3

0.563

3

0.601

 

E

2 NRTI+1 ENH+1 INSTI

34

2

0.429

2

0.2

1

0

 

E

2 NRTI+1 INSTI

35

2

0.385

1

0

3

0.446

 

E

2 NRTI+1 INSTI

37

2

0.274

1

0

10

0.027

81

E

 

39

NA

NA

1

0

NA

NA

 

E

2 NRTI+1 ENH+1 INSTI

40

2

0.494

4

0.692

3

0.623

 

E

 

42

1

0

2

0.215

2

0.445

13979

E

2 NRTI+1 ENH+1 INSTI

43

1

0

7

0.833

NA

NA

343

E

 

45

1

0

10

0.704

NA

NA

 

E

2 NRTI+1 ENH+1 INSTI

46

2

0.153

3

0.306

2

0.5

 

N

 

47

2

0.263

2

0.42

1

0

2755

E

1 NNRTI+1 PI+1 ENH+1 INSTI

49

2

0.455

1

0

2

0.324

282

E

2 NRTI+1 ENH+1 INSTI

50

1

0

2

0.344

3

0.624

576

E

2 NRTI+1 PI+1 ENH

51

1

0

1

0

3

0.593

 

E

2 NRTI+1 PI+1 ENH+1 INSTI

52

2

0.439

1

0

NA

NA

 

E

2 NRTI+1 PI+1 ENH

54

3

0.583

1

0

2

0.491

412

E

2 NRTI+1 PI+1 ENH

55

1

0

1

0

2

0.384

 

E

1 PI+1 ENH

56

12

0.392

3

0.641

NA

NA

1368

E

2 NRTI+1 ENH+1 INSTI

57

1

0

1

0

NA

NA

12786

E

2 NRTI+1 ENH+1 INSTI

58

1

0

3

0.59

4

0.659

1281

E

2 NRTI+1 ENH+1 INSTI

59

3

0.572

1

0

4

0.705

581

E

2 NRTI+1 INSTI

60

2

0.487

3

0.619

4

0.716

 

E

2 NRTI+1 PI+1 ENH

61

2

0.27

3

0.632

4

0.679

432

E

 

63

3

0.612

6

0.708

1

0

57

E

2 NRTI+1 PI

64

5

0.759

3

0.576

4

0.697

 

E

 

65

2

0.492

2

0.441

3

0.186

 

E

2 NRTI+1 PI+1 ENH

66

1

0

2

0.49

5

0.602

32

E

2 NRTI+1 ENH+1 INSTI

67

NA

NA

2

0.45

5

0.767

 

E

2 NRTI+1 NNRTI

68

3

0.564

5

0.736

5

0.758

 

E

2 NRTI+1 NNRTI

69

1

0

4

0.543

7

0.777

48

E

2 NRTI+1 PI+1 ENH

70

4

0.603

2

0.364

5

0.743

17

N

 

71

1

0

4

0.72

6

0.812

 

E

1 NRTI+1 NNRTI+1 INSTI

72

2

0.209

3

0.614

NA

NA

353

E

2 NRTI+1 NNRTI

73

1

0

3

0.66

2

0.414

 

E

2 NRTI+1 ENH+1 INSTI

74

1

0

5

0.779

4

0.037

1

E

2 NRTI+1 ENH+1 INSTI

75

1

0

3

0.533

7

0.663

 

E

2 NRTI+1 PI+1 ENH

76

1

0

1

0

5

0.777

432

E

2 NRTI+1 INSTI

77

4

0.613

4

0.658

6

0.768

113

E

2 NRTI+1 PI+1 ENH+1 INSTI

78

2

0.183

3

0.608

5

0.664

113

E

2 NRTI+1 PI+1 ENH

79

1

0

1

0

2

0.396

 

E

2 NRTI+1 INSTI

82

1

0

NA

NA

NA

NA

 

N

 

83

2

0.467

NA

NA

NA

NA

554

E

2 NRTI+1 NNRTI

85

2

0.351

1

0

2

0.477

183

E

2 NRTI+1 INSTI

86

2

0.433

1

0

NA

NA

 

E

2 NRTI+1 PI+1 ENH+1 INSTI

87

2

0.499

NA

NA

NA

NA

 

E

2 NRTI+1 ENH+1 INSTI

88

1

0

NA

NA

1

0

37

N

 

90

3

0.534

2

0.498

3

0.54

8914

E

2 NRTI+1 PI+1 ENH+1 CCR5+1 INSTI

91

1

0

2

0.003

NA

NA

117

E

2 NRTI+1 INSTI

93

2

0.446

1

0

NA

NA

94

E

2 NRTI+1 ENH+1 INSTI

94

1

0

NA

NA

NA

NA

145

E

2 NRTI+1 PI+1 ENH

97

5

0.718

2

0.455

5

0.782

 

E

2 NRTI+1 INSTI

99

1

0

NA

NA

1

0

184

E

2 NRTI+1 ENH+1 INSTI

Avg

2

0.265

2

0.357

4

0.47

  1. A haplotype diversity of 0 indicates no diversity because only a single haplotype was reconstructed by PredictHaplo for the sample. Amplicons that did not pass the filtering thresholds for a sample are indicated by “NA”. ARV exposure is reported at time that blood sample was taken. N: Naïve, E: Experienced, NRTI: Nucleoside reverse transcriptase inhibitors, NNRTI: Non-nucleoside reverse transcriptase inhibitors, ENH: enhancer elements, PI: Protease Inhibitor, INSTI: Integrase Strand Transfer Inhibitor, CCR5: Cysteine-Cysteine Chemokine Receptor 5.
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