Table 1 Results for of the prediction of tumor/normal status for different cancer types calculated by the SVM model described in the main text.
From: A Method for Identification of the Methylation Level of CpG Islands From NGS Data
Cancer type | EGA ID | Percent of true positive cases | Percent of true negative cases | Percent of false positive cases | Percent of false negative cases |
|---|---|---|---|---|---|
Breast Cancer | EGAD00001000126 | 79 | 60 | 21 | 40 |
Meduloblastoma | EGAD00001000816 | 76 | 96 | 24 | 4 |
T-Cell Lymphoma | EGAD00001002738 | 84 | 82 | 16 | 18 |
Prostate Cancer | EGAD00001000263 | 70 | 97 | 30 | 3 |
Hepatocarcinoma | EGAD00001001881 | 87 | 71 | 13 | 29 |
