Table 3 Exonic mitochondrial SNPs associated with phenotypic traits and PCs.
Trait | CHR | SNP | Allele | Gene | Consequence | Model | GenBank MAF | MAF | SE (95% CI) | P-value* | FDR | Effect size (beta) |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Δ-LT | MT | rs2000975 | G | ATP6 | Missense | ADD | 0.019 | 0.032 | 11.24 (− 48.2 to − 4.2) | 0.023 | 0.39 | − 26.19 |
MT | rs2857284 | C | ND4 | Synonymous | ADD | 0.021 | 0.032 | 11.24 (− 48.2 to − 4.2) | 0.023 | 0.39 | − 26.19 | |
MT | rs193302956 | T | ND5 | Synonymous | ADD | 0.12 | 0.081 | 7.25 (− 29 to − 0.5) | 0.046 | 0.49 | − 14.75 | |
MT | rs193302985 | A | CYB | Synonymous | ADD | 0.044 | 0.113 | 6.08 (− 29 to − 5.2) | 0.0067 | 0.28 | − 17.10 | |
PC3 | MT | rs285728 | C | ND4 | Synonymous | ADD | 0.021 | 0.032 | 0.72 (0.17 – 3.0) | 0.032 | 0.54 | 1.57 |
MT | rs2000975 | G | ATP6 | Missense | ADD | 0.019 | 0.032 | 0.72 (0.17 – 3.0) | 0.032 | 0.54 | 1.57 | |
PC4 | MT | rs2853493 | G | ND4 | Synonymous | ADD | 0.28 | 0.258 | 0.25 (− 1.0 to − 0.03) | 0.041 | 0.69 | − 0.53 |
MT | rs2853498 | G | tRNALeu | − | ADD | 0.23 | 0.258 | 0.25 (− 1.0 to − 0.03) | 0.041 | 0.69 | − 0.53 | |
MT | rs2853499 | A | ND5 | Synonymous | ADD | 0.28 | 0.258 | 0.25 (− 1.0 to − 0.03) | 0.041 | 0.69 | − 0.53 |