Figure 4 | Scientific Reports

Figure 4

From: A new functional JAZ degron sequence in strawberry JAZ1 revealed by structural and interaction studies on the COI1–JA-Ile/COR–JAZs complexes

Figure 4

MD evaluation of the FaCOI1–FaJAZ1 complex with three different ligands. The RMSD of the Cα of the two proteins in the complex: FaCOI1–FaJAZ1 and JA-Ile (a), FaCOI1–FaJAZ1 and COR (b), and FaCOI1–FaJAZ1 and (−)-JA-Ile (c). Timeline representation of the total number of interactions or specific contacts (adding the H-bonds, hydrophobic interactions, ionic interactions, and water bridges) that the proteins made with the ligand throughout the MD simulation in FaCOI1–FaJAZ1 and JA-Ile (d), FaCOI1–FaJAZ1 and COR (e), FaCOI1–FaJAZ1 and (−)-JA-Ile (f). At, Arabidopsis thaliana; Fa, Fragaria × ananassa; COI1, CORONATINE INSENSITIVE1; COR, coronatine; JAZ, JASMONATE-ZIM DOMAIN.

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