Table 1 Number of avian parvoviruses and picornaviruses identified and the total abundance of viruses in each of the samples.

From: Metagenomic characterisation of avian parvoviruses and picornaviruses from Australian wild ducks

 

Late autumn

Late winter

Late spring/early summer

May-18 (05.18)

Aug-18 (08.18)

Nov-18 (11.18)

Dec-16 (12.16)

Minimum number of viruses

Virus reads generated (%)

Minimum number of viruses

Virus reads generated (%)

Minimum number of viruses

Virus reads generated (%)

Minimum number of viruses

Virus reads generated (%)

Parvovirus

PBD

1?

0.0027

7

0.0522

NA

8

4.7747

CT

1?

0.0002

7

0.0894

2 (individual)

0.0220 (individual)

NA

14 (individual)

0.9400 (individual)

GT

NA

NA

2

0.0340

NA

WD

NA

6

0.1725

NA

NA

Picornavirus

PBD

2

3.1100

3

0.5100

NA

2?

 < 0.0001

CT

1

0.0260

2

0.0002

0 (individual)

0.0000 (individual)

NA

GT

NA

NA

0

0.0000

NA

WD

NA

3

15.8490

NA

NA

  1. The table gives the minimum number of avian parvo- and picornaviruses identified and the percentage abundance of the virus reads (%). The bold values give the data on the samples used for the current study. The underlined values with (?) indicate the presence of virus; however, the number of virus reads were insignificant (< 0.0001%) or no possible long consensus sequences (> 500nt with reasonable coverage of greater than 20 for a minimum mapping quality of 20) were generated. Hence these virus reads were excluded from the study. The values having (NA) indicate no sample collection on the particular time period.