Table 1 List of cDNA datasets analyzed in this study.
From: Systems-level differential gene expression analysis reveals new genetic variants of oral cancer
S. no | Geo ID | Sample count (case: control) | Platform used | Tissues |
|---|---|---|---|---|
1 | GSE2280 | 22:05 | GPL96[HG-U133A] Affymetrix Human Genome U133A Array | Oral lymph node |
2 | GSE3524 | 16:04 | GPL96[HG-U133A] Affymetrix Human Genome U133A Array | Oral squamous |
3 | GSE10063 | 4:30 | GPL570[HG-U133_Plus_2] Affymetrix Human Genome U133 | Keratinocyte cell |
4 | GSE13601 | 31:27 | GPL8300 [HG_U95Av2] Affymetrix Human Genome U95 Array | Tongue |
5 | GSE21866 | 2:03 | GPL201 [HG-Focus] Affymetrix Human HG-Focus Target Array | Tongue squamous |
6 | GSE32142 | 2:02 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Oral squamous |
7 | GSE36111 | 5:00 | GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array | Oral squamous |
8 | GSE38058 | 4:00 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Oral squamous |
9 | GSE38517 | 9:11 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Fibroblasts |
10 | GSE39376 | 11:17 | GPL201 [HG-Focus] Affymetrix Human HG-Focus Target Array | Buccal carcinoma cell |
11 | GSE43862 | 1:03 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Oral squamous |
12 | GSE44458 | 4:00 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Tongue squamous |
13 | GSE49673 | 6:06 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Parotid adenocarcinoma |
14 | GSE52811 | 4:04 | GPL8786 [miRNA-1] Affymetrix Multispecies miRNA-1 Array | Oral keratinocyte |
15 | GSE52915 | 27:00 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Tongue squamous |
16 | GSE57022 | 2:02 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Parotid adenocarcinoma |
17 | GSE59795 | 10:10 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Parotid adenocarcinoma |
18 | GSE70301 | 3:03 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 | Tongue squamous |
19 | GSE73171 | 3:03 | GPL14613 [miRNA-2] Affymetrix Multispecies miRNA-2 Array | Laryngeal squamous |
20 | GSE75127 | 4:4 | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | Oral squamous |
21 | GSE81821 | 5:5 | GPL14613 [miRNA-2] Affymetrix Multispecies miRNA-2 Array | Metastatic tumor tissue |
