Table 2 Enrichment analysis of significantly enriched PFAM domains, KEGG metabolic pathways, and molecular function GO terms among differentially expressed proteins (DEPs). Significant GO terms are reported here.
GO terms significantly enriched | # of GO terms present in reference genome | # of GO term hits among DEPs | p value | Adjusted p value |
---|---|---|---|---|
Enrichment analysis of upregulated DEPs | ||||
Catalytic activity | 14,617 | 146 | 3.63E−35 | 1.19E−32 |
Molecular function | 27,777 | 190 | 1.35E−26 | 4.44E−24 |
Biological process | 19,951 | 147 | 3.98E−21 | 2.22E−18 |
Metabolic process | 15,661 | 125 | 5.41E−20 | 3.02E−17 |
Hydrolase activity | 4,253 | 59 | 5.30E−19 | 1.74E−16 |
Oxidoreductase activity | 3,021 | 46 | 2.33E−16 | 7.67E−14 |
Oxidation–reduction process | 2,547 | 42 | 3.60E−16 | 2.01E−13 |
Hydrolase activity, hydrolyzing O-glycosyl compounds | 730 | 22 | 5.84E−14 | 1.92E−11 |
Hydrolase activity, acting on glycosyl bonds | 814 | 23 | 5.88E−14 | 1.93E−11 |
Cofactor binding | 1,827 | 29 | 4.53E−11 | 1.49E−08 |
Carbohydrate metabolic process | 1,098 | 20 | 5.45E−09 | 3.05E−06 |
Response to oxidative stress | 336 | 11 | 5.43E−08 | 3.04E−05 |
Heme binding | 961 | 17 | 1.18E−07 | 3.88E−05 |
Tetrapyrrole binding | 964 | 17 | 1.23E−07 | 4.05E−05 |
Antioxidant activity | 365 | 11 | 1.25E−07 | 4.11E−05 |
Response to stress | 1,055 | 18 | 8.49E−08 | 4.75E−05 |
Binding | 16,455 | 97 | 2.12E−07 | 6.97E−05 |
Chitinase activity | 37 | 5 | 2.40E−07 | 7.90E−05 |
Metal ion binding | 3,558 | 34 | 3.20E−07 | 0.000105 |
Cation binding | 3,586 | 34 | 3.82E−07 | 0.000126 |
Glucosamine-containing compound catabolic process | 37 | 5 | 2.40E−07 | 0.000134 |
Glucosamine-containing compound metabolic process | 37 | 5 | 2.40E−07 | 0.000134 |
Amino sugar metabolic process | 37 | 5 | 2.40E−07 | 0.000134 |
Aminoglycan catabolic process | 37 | 5 | 2.40E−07 | 0.000134 |
Chitin catabolic process | 37 | 5 | 2.40E−07 | 0.000134 |
Chitin metabolic process | 37 | 5 | 2.40E−07 | 0.000134 |
Amino sugar catabolic process | 37 | 5 | 2.40E−07 | 0.000134 |
Peroxidase activity | 339 | 10 | 5.69E−07 | 0.000187 |
Oxidoreductase activity, acting on peroxide as acceptor | 343 | 10 | 6.33E−07 | 0.000208 |
Drug catabolic process | 41 | 5 | 4.07E−07 | 0.000228 |
Cell wall macromolecule catabolic process | 41 | 5 | 4.07E−07 | 0.000228 |
Cell wall macromolecule metabolic process | 46 | 5 | 7.34E−07 | 0.000410 |
Aminoglycan metabolic process | 46 | 5 | 7.34E−07 | 0.000410 |
Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 52 | 5 | 1.37E−06 | 0.000451 |
Dioxygenase activity | 55 | 5 | 1.81E−06 | 0.000595 |
Carbohydrate derivative catabolic process | 55 | 5 | 1.81E−06 | 0.001012 |
Response to stimulus | 1,790 | 21 | 3.13E−06 | 0.001750 |
Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | 70 | 5 | 6.04E−06 | 0.001987 |
Peptidase activity | 1,134 | 15 | 2.12E−05 | 0.006975 |
Exopeptidase activity | 152 | 6 | 2.14E−05 | 0.007041 |
Proteolysis | 1,223 | 16 | 1.29E−05 | 0.007211 |
Magnesium ion binding | 238 | 7 | 2.94E−05 | 0.009673 |
Lyase activity | 431 | 9 | 3.28E−05 | 0.010791 |
Hydrolase activity, acting on acid phosphorus-nitrogen bonds | 348 | 8 | 4.60E−05 | 0.015134 |
Serine-type peptidase activity | 348 | 8 | 4.60E−05 | 0.015134 |
Serine hydrolase activity | 348 | 8 | 4.60E−05 | 0.015134 |
Serine-type carboxypeptidase activity | 111 | 5 | 5.66E−05 | 0.018621 |
Carboxypeptidase activity | 113 | 5 | 6.16E−05 | 0.020266 |
Peptidase activity, acting on L-amino acid peptides | 1,105 | 14 | 6.30E−05 | 0.020727 |
Terpene synthase activity | 114 | 5 | 6.43E−05 | 0.021155 |
Cell wall organization or biogenesis | 172 | 6 | 4.29E−05 | 0.023981 |
Serine-type exopeptidase activity | 120 | 5 | 8.20E−05 | 0.026978 |
Carbon–oxygen lyase activity, acting on phosphates | 121 | 5 | 8.53E−05 | 0.028064 |
Ion binding | 8,249 | 51 | 0.00011 | 0.036848 |
Enrichment analysis of downregulated DEPs | ||||
Photosynthesis, light harvesting | 32 | 7 | 1.23E−13 | 6.88E−11 |
Catalytic activity | 14,617 | 61 | 1.75E−12 | 5.76E−10 |
Photosynthesis, light reaction | 56 | 7 | 8.22E−12 | 4.59E−09 |
Biological process | 19,951 | 71 | 1.75E−11 | 9.78E−09 |
Photosynthesis | 154 | 8 | 3.28E−10 | 1.83E−07 |
Generation of precursor metabolites and energy | 233 | 9 | 3.47E−10 | 1.94E−07 |
Metabolic process | 15,661 | 57 | 3.45E−09 | 1.93E−06 |
Carbohydrate metabolic process | 1,098 | 12 | 5.08E−07 | 0.000284 |
Molecular function | 27,777 | 75 | 1.57E−06 | 0.000517 |
Protein folding | 193 | 6 | 1.18E−06 | 0.000660 |
Oxidoreductase activity | 3,021 | 18 | 4.77E−06 | 0.001569 |
Hydrolase activity, hydrolyzing O-glycosyl compounds | 730 | 8 | 4.23E−05 | 0.013917 |
Protein import | 36 | 3 | 3.40E−05 | 0.019006 |
Oxidation–reduction process | 2,547 | 15 | 3.56E−05 | 0.019900 |
Hydrolase activity, acting on glycosyl bonds | 814 | 8 | 9.01E−05 | 0.029643 |