Figure 1

Schematic representation of the study work flow and methodology. Assays used in the study included. (a) The ITS1 PCR–RFLP assay for diagnosis of L. tropica patients. (b) Quantitative polymerase chain reaction (qPCR) analysis for quantification of L. tropica. (c) NextSeq 500 platform based RNA-seq method for investigation of whole genome transcription in biopsy samples. (d) Proximity extension assay (PEA) in biopsy supernatants for inflammatory protein assessment. (e, g) Enzyme-linked immunosorbent assay (ELISA) in biopsy supernatants and serum samples for L. tropica specific IgG antibody assessment. (f, h) Antibody-dependent neutrophil phagocytosis (ADNP) and Antibody-dependent cellular phagocytosis by human monocytes (ADCP) in biopsy supernatants and serum samples.