Table 2 Candidate reference genes for qPCR.

From: Integrating metabolomics and targeted gene expression to uncover potential biomarkers of fungal/oomycetes-associated disease susceptibility in grapevine

Gene

(NCBI accession number)

Primer sequence

Amplicon length (bp)

Ta (°C)

Tm (°C)

60S

(XM_002270599.3)

Fw: ATCTACCTCAAGCTCCTAGTC

Rev: CAATCTTGTCCTCCTTTCCT

165

60

79.6

TTC7B

(XM_002283371.4)

Fw: GCTCTGTTGTTGAAGATGGG

Rev: GGAAGCAGTTTGTAGCATCAG

156

60

79.9

EF1α

(XM_002284888.3)

Fw: GAACTGGGTGCTTGATAGGC

Rev: ACCAAAATATCCGGAGTAAAAGA

164

60

79.7

UBQ

(XR_002030722.1)

Fw: GCCCTGCACTTACCATCTTTAAG

Rev: GAGGGTCGTCAGGATTTGGA

75

60

78.9

SAND

(XM_002285134.3)

Fw: CAACATCCTTTACCCATTGACAGA

Rev: GCATTTGATCCACTTGCAGATAAG

76

60

79.2

GAPDH

(XM_002263109.3)

Fw: TCAAGGTCAAGGACTCTAACACC

Rev: CCAACAACGAACATAGGAGCA

226

60

81.3

ACTINa

(XM_019223591.1)

Fw: ATTCCTCACCATCATCAGCA

Rev: GACCCCCTCCTACTAAAACT

89

55

77.5

α-TUB

(XM_002285685.4)

Fw: CAGCCAGATCTTCACGAGCTT

Rev: GTTCTCGCGCATTGACCATA

119

60

78.8

AP2M

(XM_002281261.3)

Fw: CCTCTCTGGAATGCCTGATTT

Rev: CTTTAGCAGGACGGGATTTA

89

55

75.0

β-TUB

(XM_002275270.3)

Fw: TGAACCACTTGATCTCTGCGACTA

Rev: CAGCTTGCGGAGGTCTGAGT

86

60

82.3

  1. Genes, gene accession numbers, primer sequences (Fw, forward; Rev, reverse), amplicon length (bp, base pairs) and qPCR annealing (Ta) and melting (Tm) temperatures are indicated.
  2. aAlternative splicing variant.