Table 1 An overview of the organisms supported by the GOxploreR package.
From: Graph-based exploitation of gene ontology using GOxploreR for scrutinizing biological significance
Organism | Option name | Genes | Levels | BP-terms |
|---|---|---|---|---|
Human | "Homo sapiens"/"Human" | 19155 | 19 | 12436 |
Mouse | "Mus musculus"/"Mouse" | 20929 | 18 | 12328 |
Caenorhabditis elegans | "Caenorhabditis elegans"/"Worm" | 14697 | 17 | 3689 |
Drosophila melanogaster | "Drosophila melanogaster"/"Fruit fly" | 12683 | 18 | 5323 |
Rat | "Rattus norvegicus"/"Rat" | 19383 | 18 | 11584 |
Baker’s yeast | "Saccharomyces cerevisiae"/"Yeast" | 5502 | 17 | 3050 |
Zebrafish | "Danio rerio"/"Zebrafish" | 20718 | 18 | 5404 |
Arabidopsis thaliana | "Arabidopsis thaliana"/"Cress" | 25891 | 17 | 4059 |
S. pombe | "Schizosaccharomyces pombe"/"Fission yeast" | 5055 | 16 | 2973 |
Escherichia coli | "Escherichia coli"/"E.coli" | 3449 | 15 | 1491 |
