Table 3 A comparison of the capabilities of various software tools for analyzing GO.

Name	R Package	Direct structural information to GO	Enrichment	Reduced GO-DAG	Prioritizing GO-terms
GOxploreR	Yes	Yes	No	Yes	Yes
OntologyTraverser³⁷	Yes	Partly	Yes	No	No
Categorizer³⁸	No	No	Yes	No	No
G-SESAME³⁹	No	No	No	No	No
GOrilla⁴⁰	No	No	Yes	No	No
GOGrapher⁴¹	No	Partly	No	No	No
agriGO⁴²	No	No	Yes	No	No
topGO⁴³	Yes	Yes	Yes	No	No
GOdb⁴⁴	Yes	Yes	No	No	No

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