Table 3 CTCF binding motifs detected in Group 1 tDNAs.
From: Implication of a new function of human tDNAs in chromatin organization
tDNA | Motif sequence (5′–3′) | Strand | Score |
|---|---|---|---|
tRNA-Cys-GCA-2-3 | CCCCCTCTGCCGGC | p | 12.9052 |
tRNA-Arg-TCT-1-1 | AGCCACCTGTTGGA | n | 10.056 |
tRNA-Arg-CCT-2-1 | CGCGCCCCAGTGGC | n | 9.05525 |
tRNA-Leu-CAG-2-1 | TCTCCCCTGGAGGC | p | 7.41812 |
tRNA-Trp-CCA-2-1 | TGTGACCTCGTGGC | p | 6.36065 |
tRNA-iMet-CAT-1-6 | TGTCCCCTTCAGCT | p | 5.96006 |
tRNA-Arg-TCT-1-1 | CTCCAACAGGTGGC | p | 5.72964 |
tRNA-Trp-CCA-2-1 | CGCAACCTTCTGAT | n | 5.37508 |
tRNA-Leu-CAA-4-1 | CGCCTCCATCCGGA | n | 5.22539 |
tRNA-Glu-CTC-1-7 | AGTTCCCTGGTGGT | n | 5.02143 |
tRNA-SeC-TCA-1-1 | TTCCACCTTTCGGG | n | 4.99827 |
tRNA-Arg-ACG-1-3 | TGCCATCTCAGGGC | p | 4.90309 |
tRNA-Leu-CAA-4-1 | CTCCATCCGGAGAC | n | 4.7661 |
tRNA-Glu-TTC-1-1 | TTCACCCAGGTGGC | n | 4.67791 |
tRNA-His-GTG-1-1 | AACCACCTGCCGTG | n | 3.75582 |
tRNA-Arg-TCT-1-1 | GGACTTCTAGAGGC | p | 3.38381 |
tRNA-Ala-TGC-4-1 | CGGCATCTCCAGAC | p | 3.24217 |
tRNA-Asn-GTT-1-1 | CGTCCCTGGGTGGG | n | 3.07971 |
tRNA-Asn-GTT-2-3 | CGTCCCTGGGTGGG | p | 3.07971 |
tRNA-Asn-GTT-2-6 | CGTCCCTGGGTGGG | n | 3.07971 |
