Table 5 Bacterial species identified by sequencing of the most representative DGGE bands amplified from fecal DNA of type 1 diabetes (cases) and healthy children (controls).
Closet Relative | Identity | Phylum | Class | Order | Family | Genus | Cases | Controls |
|---|---|---|---|---|---|---|---|---|
Alistipes putredinis | 100% | Bacteroidetes | Bacteroidia | Bacteroidales | Rikenellaceae | Alistipes | 10% (4) | 35.7% (20) |
Alistipes senegalensis | 96% | Bacteroidetes | Bacteroidia | Bacteroidales | Rikenellaceae | Alistipes | 75% (30) | 50% (28) |
Bacteroides coprocola | 98% | Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | 5% (2) | 0% (0) |
Bacteroides dorei | 100% | Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | 67.5%(27) | 80.3% (45) |
Bacteroides faecis | 99% | Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | 15% (6) | 16.1% (9) |
Bacteroides finegoldii | 94% | Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | 17.5% (7) | 46.4% (26) |
Bacteroides intestinalis | 97% | Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | 90% (36) | 92.8% (52) |
Bacteroides timonensis | 100% | Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | 20% (8) | 10.7% (6) |
Barnesiella intestinihominis | 99% | Bacteroidetes | Bacteroidia | Bacteroidales | Barnesiellaceae | Barnesiella | 72.5% (29) | 66.1% (37) |
Bifidobacterium faecale | 100% | Actinobacteria | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | 0% (0) | 28.6% (16) | |
Christensenella timonensis | 93% | Firmicutes | Clostridia | Clostridiales | Christensenellaceae | Christensenella | 40% (16) | 16.1% (9) |
Clostridium dakarense | 97% | Firmicutes | Clostridia | Clostridiales | Peptostreptococcaceae | Romboutsia | 5% (2) | 5.3% (3) |
Colidextribacter massiliensis | 93% | Firmicutes | Clostridia | Clostridiales | Colidextribacter | 42.5% (17) | 39.3% (22) | |
Coprobacter fastidiosus | 82% | Bacteroidetes | Bacteroidia | Bacteroidales | Barnesiellaceae | Coprobacter | 0% (0) | 5.3% (3) |
Dialister propionicifaciens | 89% | Firmicutes | Negativicutes | Veillonellales | Veillonellaceae | Dialister | 10% (4) | 25% (14) |
Dialister succinatiphilus | 100% | Firmicutes | Negativicutes | Veillonellales | Veillonellaceae | Dialister | 5% (2) | 30.3% (17) |
Escherichia coli | 99% | Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | 65% (26) | 76.8% (43) |
Eubacterium rectale | 100% | Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 3 5% (14) | 33.9% (19) | |
Fusicatenibacter saccharivorans | 100% | Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | Fusicatenibacter | 87.5% (35) | 100% (56) |
Megasphaera massiliensis | 99% | Firmicutes | Negativicutes | Veillonellales | Veillonellaceae | Megasphaera | 37.5% (15) | 41.1% (23) |
Negativibacillus massiliensis | 91% | Firmicutes | Clostridia | Clostridiales | Ruminococcaceae | Negativibacillus | 20% (8) | 26.8% (15) |
Parabacteroides johnsonii | 95% | Bacteroidetes | Bacteroidia | Bacteroidales | Tannerellaceae | Parabacteroides | 10% (4) | 23.2% (13) |
Prevotella copri | 99% | Bacteroidetes | Bacteroidia | Bacteroidales | Prevotellaceae | Prevotella | 57.5% (23) | 76.8% (43) |
Pseudoflavonifractor phocaeensis | 94% | Firmicutes | Clostridia | Clostridiales | Pseudoflavonifractor | 20% (8) | 51.8% (29) | |
Romboutsia timonensis | 100% | Firmicutes | Clostridia | Clostridiales | Peptostreptococcaceae | Romboutsia | 82.5% (33) | 87.5% (49) |
Roseburia faecis | 99% | Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | Roseburia | 60% (24) | 83.9% (47) |
Ruminococcus bromii | 93% | Firmicutes | Clostridia | Clostridiales | Ruminococcaceae | Ruminococcus | 45% (18) | 41.1% (23) |
Subdoligranulum variabile | 97% | Firmicutes | Clostridia | Clostridiales | Ruminococcaceae | Subdoligranulum | 57.5% (23) | 78.6% (44) |
Urmitella timonensis | 88% | Firmicutes | Tissierellia | Tissierellales | Tissierellaceae | Urmitella | 40% (16) | 39.3% (22) |
