Table 3 Functional classification and expression levels of the CDS extracted from the de novo assembly of Rhipicephalus microplus transcriptome.
Class | CDS | RPKM | CDS (%) | RPKM (%) |
|---|---|---|---|---|
Unknown | 4126 | 4,454,604 | 21.9 | 30.8 |
Secreted | 3263 | 2,500,454 | 17.3 | 17.3 |
Metabolism, energy | 263 | 1,364,735 | 1.4 | 9.4 |
Signal transduction | 1225 | 667,446 | 6.5 | 4.6 |
Unknown, conserved | 1435 | 628,726 | 7.6 | 4.3 |
Extracellular matrix/cell adhesion | 308 | 501,770 | 1.6 | 3.5 |
Protein synthesis machinery | 516 | 476,686 | 2.7 | 3.3 |
Transposable element | 729 | 440,941 | 3.9 | 3.0 |
Transcription machinery | 1208 | 393,739 | 6.4 | 2.7 |
Protein modification machinery | 508 | 295,577 | 2.7 | 2.0 |
Metabolism, lipid | 413 | 275,046 | 2.2 | 1.9 |
Secreted proteinase inhibitor | 148 | 267,833 | 0.8 | 1.9 |
Protein export machinery | 568 | 242,176 | 3.0 | 1.7 |
Immunity | 210 | 212,390 | 1.1 | 1.5 |
Metabolism, carbohydrate | 272 | 202,860 | 1.4 | 1.4 |
Nuclear regulation | 391 | 196,891 | 2.1 | 1.4 |
Pathogen origin | 14 | 191,693 | 0.1 | 1.3 |
Oxidant metabolism/detoxification | 386 | 176,584 | 2.0 | 1.2 |
Cytoskeletal | 383 | 158,558 | 2.0 | 1.1 |
Proteasome machinery | 493 | 155,816 | 2.6 | 1.1 |
Transporters/storage | 531 | 142,754 | 2.8 | 1.0 |
Secreted, lipocalins | 252 | 128,862 | 1.3 | 0.9 |
Secreted protease | 88 | 104,916 | 0.5 | 0.7 |
Signal transduction, apoptosis | 83 | 56,990 | 0.4 | 0.4 |
Metabolism, amino acid | 133 | 44,282 | 0.7 | 0.3 |
Secreted, mucins | 26 | 36,072 | 0.1 | 0.2 |
Transcription factor | 130 | 34,192 | 0.7 | 0.2 |
Metabolism, nucleotide | 178 | 33,258 | 0.9 | 0.2 |
Vertebrate origin | 262 | 24,904 | 1.4 | 0.2 |
Viral | 124 | 21,701 | 0.7 | 0.1 |
Storage | 34 | 16,725 | 0.2 | 0.1 |
Metabolism, intermediate | 71 | 16,710 | 0.4 | 0.1 |
Bacterial | 37 | 5217 | 0.2 | 0.0 |
Nuclear export | 38 | 3488 | 0.2 | 0.0 |
Secreted, toxin | 8 | 2051 | 0.0 | 0.0 |
Secreted, immunity | 3 | 614 | 0.0 | 0.0 |
Total | 18,857 |
