Table 3 Comparison of some existing Galaxy heatmap and clustering tools.
From: GIANT: galaxy-based tool for interactive analysis of transcriptomic data
Heatmap and clustering tool | Generic input | Interactive output | Filter options | Cross studies | Param. clustering | Cluster assignation | Side colors | Colors definition |
|---|---|---|---|---|---|---|---|---|
GIANT heatmap tool | \(\checkmark \) | \(\checkmark \) | \(\checkmark \) | \(\checkmark \) | \(\checkmark \) | \(\checkmark \) | \(\checkmark \) | \(\checkmark \) |
LIMMA-voom5 | \(\checkmark \) | \(\checkmark \) | ||||||
heatmap | \(\checkmark \) | \(\checkmark \) | ||||||
heatmap_colormanipulation | \(\checkmark \) | \(\checkmark \) | \(\checkmark \) | |||||
plotHeatmap | \(\checkmark \) | \(\checkmark \) | \(\checkmark \) | |||||
ggplot2_heatmap26 | \(\checkmark \) | \(\checkmark \) | \(\sim \) |
