Table 2 Quantity of SNPs selected by the feature selection (FS) techniques when using allele proportions (APs) and allele dosages (ADs).
From: Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance
Method | SNPs (AD) | SNPs (AP) |
|---|---|---|
Total SNP dataset (All) | 5224 | 14,540 |
Gradient Tree Boosting (FS1) | 283 | 345 |
L1-based Support Vector Classification (SVC) System (FS2) | 135 | 140 |
Extra Trees (FS3) | 1991 | 2595 |
F statistic from ANOVA (FS4) | 327 | 922 |
Random Forests (FS5) | 1345 | 1253 |
