Table 1 22 [SWI⁺]-regulated TFs and their targets.

TF	Target enrichment			Regulation		Targets among [SWI⁺] DEGs
	^#for [SWI⁺]			swi1∆	[SWI⁺]	Total	Interpretable
	User (%)	CK (%)	P-value	swi1∆	[SWI⁺]	Total	↑	↓	Ratio (%)
Bas1	66.97	17.39	0		↑	521	96	327	81.2
Mig2	12.21	31.46	0	↑	↑	95	17	65	86.3
Nrg2	5.78	39.13	0		↑	45	0	40	88.9
YPR015C	12.34	25.81	0	↑	↑	96	5	41	47.9
Rpi1	6.30	28.16	4.5E−11		↑	49	7	34	83.7
Rds1	6.81	20.31	1.9E−06	↑	↑	53	7	37	83.0
Gcr1	29.18	14.05	2.8E−06		↑	227	51	109	70.5
Crz1	25.84	21.27	0		↓	201	25	116	70.1
Gis1	24.81	32.82	0		↓	193	7	150	81.3
Mig1	23.01	30.76	0		↓	179	9	97	59.2
Rcs1	30.72	20.24	0		↓	239	17	51	28.5
Rlm1	25.45	28.01	0		↓	198	11	172	92.4
Sut1	23.39	24.93	0	↓	↓	182	10	66	41.8
Xbp1	35.60	18.07	0	↓	↓	277	47	103	54.2
Rpn4	91.00	12.14	9E−15		↓	708	222	396	87.3
Cat8	7.07	31.07	3.3E−14		↓	55	2	43	81.8
Adr1	17.35	17.29	4.1E−09		↓	135	8	94	75.6
Hms1	23.26	15.37	9.2E−08	↓	↓	181	24	103	70.2
Mga1	17.10	14.98	2.5E−05	↓	↓	133	24	79	77.4
Eds1	3.86	22.06	4.5E−05		↓	30	7	8	50.0
Gal3	2.83	25.00	4.6E−05		↓	22	2	8	45.5
Znf1	2.70	23.33	0.00019		↓	21	4	2	28.6

^#User (%), ratio of the target number of a TF and the total number of [SWI⁺]-DEGs; CK (%), ratio between the number of targets found in [SWI⁺]-DEGs and the number of total targets of a TF from YEASTRACT. The TF/targets linkage is based on genetic data published.

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