Table 1 Summary of input datasets for Illumina (PE300) and Oxford Nanopore Technologies (ONT) reads for LR hybrid female assembly.

From: Development of whole-genome multiplex assays and construction of an integrated genetic map using SSR markers in Senegalese sole

Library

Read length N50 (bp)

Fragment length (bp)

Total reads

Yield (Gb)

Error r1 (%)

Error r2 (%)

Sequencing coverageb

PE300

101

330

1,005,526

101.56

0.29

0.62

142.24

ONT 1DSQ

8203

–

64,016

0.40

6.7

 

0.56

ONT MinIONa

10,802

–

1,311,044

9.38

17.6

–

12.57

  1. aInformation corresponding to the filtered 1D and 1D2 reads produced by five MinION runs. Error rate estimated as sum of mismatched, inserted bases and deleted bases divided by length of alignment of Oxford Nanopore Technologies (ONT) reads to the control sequence
  2. bCoverage estimates are calculated assuming a genome size of 714 Mb (C-value of Solea solea).
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