Table 2 Novel marmoset E. coli genomes have similar statistics as pathogenic, pks-encoding E. coli strains IHE3034 and NC101, and cnf-encoding uropathogenic E. coli strain UTI89. Virulence factor genes for toxins, survival factors, and adhesins, as well as antibiotic resistance genes, were identified in the marmoset E. coli genomes.
Strain | Isolation source | Genome length (bp) | Contigs | G+C% content | Protein-coding sequences | tRNA/rRNA | Virulence factor and antibiotic resistance genes* | GenBank accession |
|---|---|---|---|---|---|---|---|---|
S1 | Research marmoset | 5,135,378 | 98 | 50.62 | 5074 | 77/10 | pks, cnf1, pic, vat, gad, iroN, cba, cma, mcmA, mchB, mchC, mchF, mdfA | JAADCB000000000 |
S3 | Research marmoset | 5,136,704 | 91 | 50.50 | 5133 | 78/11 | pks, cnf1, pic, vat, iss, iroN, sfaS, mcmA, mdfA | JAADBZ000000000 |
S4 | Research marmoset | 5,190,399 | 112 | 50.52 | 5252 | 86/10 | pks, pic, vat, iss, iroN, sfaS, mcmA, mdfA | JAADCA000000000 |
S5 | Research marmoset | 5,168,141 | 129 | 50.40 | 5203 | 78/10 | pks, vat, iss, iroN, sfaS, mcmA, mdfA | JAADCC000000000 |
S8 | Research marmoset | 4,590,816 | 64 | 50.78 | 4442 | 79/9 | gad, lpfA, mdfA | JAADBY000000000 |
IHE3034 | Human neonatal meningitis | 5,108,383 | complete genome | 50.70 | 5045 | 97/22 | pks, vat, gad, iss, iroN, sfaS, mdfA, cdtABC | CP001969.1 |
NC101 | Research mouse | 5,021,144 | 27 | 50.57 | 4917 | 72/4 | pks, vat, gad, iss, iroN, sfaS | AEFA00000000.1 |
UTI89 | Human uropathogenic | 5,179,971 | complete genome | 50.60 | 5040 | 89/14 | cnf1, vat, gad, iss, iroN, sfaS, senB | CP000243.1 |
K12 substrain DH10B | Human nonpathogenic | 4,686,137 | complete genome | 50.80 | 4606 | 87/14 | gad, iss, mdfA | CP000948.1 |
