Table 1 Percentage of appearance for each of the 12 discovered 21-bps sequences across the different datasets, and comparison to similar viruses in nature and other hosts.
From: Classification and specific primer design for accurate detection of SARS-CoV-2 using deep learning
Source | GISAID | NCBI | NCBI | NGDC | NGDC | GISAID | GISAID | GISAID | GISAID |
|---|---|---|---|---|---|---|---|---|---|
Virus | SARS-CoV-2 | Other Taxa | SARS-CoV-2 | Other Taxa | SARS-CoV-2 | Betacoronavirus | Betacoronavirus | Betacoronavirus | Betacoronavirus |
Host | Homo Sapiens | Homo Sapiens | Homo Sapiens | Homo Sapiens | Homo Sapiens | Manis javanica | Rhinolophus affinis | Canine | Felis Catus |
# Samples | 52,645 | 20,572 | 32 | 487 | 96 | 17 | 1 | 2 | 6 |
\(^1\)CAC GTA GGA ATG TGG CAA CTT | 99.84% | 0.00% | 100.00% | 0.00% | 97.92% | 0.00% | 100.00% | 100.00% | 50.00% |
\(^1\)TAT TAG TGA TAT GTA CGA CCC | 99.73% | 0.00% | 100.00% | 0.00% | 97.92% | 0.00% | 0.00% | 100.00% | 50.00% |
\(^1\)AAT GAA TTA TCA AGT TAA TGG | 99.94% | 0.00% | 100.00% | 0.00% | 96.88% | 76.47% | 0.00% | 100.00% | 66.67% |
\(^1\)CAA CTT TTA ACG TAC CAA TGG | 99.55% | 0.00% | 100.00% | 0.00% | 97.92% | 0.00% | 0.00% | 100.00% | 50.00% |
\(^1\)CTA AAG CAT ACA ATG TAA CAC | 99.76% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 0.00% | 100.00% | 66.67% |
\(^1\)TAG CAC TCT CCA AGG GTG TTC | 99.57% | 0.00% | 100.00% | 0.00% | 97.92% | 0.00% | 0.00% | 100.00% | 66.67% |
\(^1\)TGC CAC TTG GCT ATG TAA CAC | 99.90% | 0.00% | 100.00% | 0.00% | 97.92% | 0.00% | 100.00% | 100.00% | 66.67% |
\(^1\)CAT CTA CTG ATT GGA CTA GCT | 99.79% | 0.00% | 100.00% | 0.00% | 97.92% | 0.00% | 100.00% | 100.00% | 50.00% |
\(^1\)TGA GCA GTG CTG ACT CAA CTC | 99.56% | 0.00% | 100.00% | 0.00% | 98.96% | 0.00% | 0.00% | 100.00% | 66.67% |
\(^1\)GAT GGT CAA GTA GAC TTA TTT | 99.69% | 0.00% | 100.00% | 0.00% | 96.88% | 0.00% | 0.00% | 100.00% | 66.67% |
\(^2\)AAT AGA AGA ATT ATT CTA TTC | 99.73% | 0.00% | 100.00% | 0.00% | 96.88% | 0.00% | 100.00% | 100.00% | 66.67% |
\(^2\)CGA TAA CAA CTT CTG TGG CCC | 99.06% | 0.00% | 100.00% | 0.00% | 97.92% | 0.00% | 100.00% | 50.00% | 50.00% |
