Table 3 Counts of transcripts of each class; housekeeping (HKP), secretory protein (SP) and unknown function proteins (UNK), displaying their largest fold change or mean expression value relative to time points of sampling the female and male salivary gland transcriptome based on differential expression by RNA-Seq analysis using global trimmed mean of M values (TMM) normalization.

From: De novo assembled salivary gland transcriptome and expression pattern analyses for Rhipicephalus evertsi evertsi Neuman, 1897 male and female ticks

Largest fold change between days

Housekeeping

Secretory proteins

Unknown proteins

Total number of transcripts

Number of transcripts

Fold change

p value

FDR p value

Number of transcripts

Fold change

p value

FDR p value

Number of transcripts

Fold change

p value

FDR p value

Male transcript largest fold changes

0 versus 2

286 (14%)

− 78.806

0.0016

0.0028

289 (14%)

− 775.167

0.0003

0.0005

23 (1%)

− 129.852

0.0018

0.0030

598

0 versus 4

304 (15%)

− 19.215

0.0021

0.0037

125 (6%)

− 482.646

0.0010

0.0017

27 (1%)

− 38.562

0.0034

0.0057

456

0 versus 6

389 (19%)

− 979.352

0.0014

0.0024

183 (9%)

− 4409.253

0.0005

0.0009

43 (2%)

− 1691.050

0.0005

0.0009

615

2 versus 4

110 (5%)

− 6.487

0.0030

0.0051

19 (1%)

48.490

0.0028

0.0048

5 (0%)

17.587

0.0003

0.0006

134

2 versus 6

140 (7%)

− 18.254

0.0027

0.0047

14 (1%)

60.135

0.0047

0.0074

5 (0%)

− 25.472

0.0068

0.0116

159

4 versus 6

103 (5%)

− 16.575

0.0042

0.0072

8 (0%)

39.759

0.0018

0.0031

13 (1%)

35.633

0.0055

0.0094

124

Total number of transcripts

1332

   

638

   

116

   

2086

Female transcript largest fold changes

0 versus 2

211 (6%)

− 63.870

0.0009

0.0012

71 (2%)

− 6557.445

0.0001

0.0001

18 (1%)

− 1295.401

0.0001

0.0002

300

0 versus 4

264 (8%)

− 95.169

0.0009

0.0013

104 (3%)

− 3077.285

0.0001

0.0002

15 (0%)

− 74.198

0.0012

0.0017

383

0 versus 6

497 (15%)

− 147.703

0.0005

0.0006

344 (11%)

− 292.683

0.0004

0.0005

46 (1%)

46.014

0.0002

0.0003

887

2 versus 4

119 (4%)

39.673

0.0029

0.0040

17 (1%)

− 882.441

0.0025

0.0033

8 (0%)

10.090

0.0037

0.0051

144

2 versus 6

395 (12%)

587.418

0.0009

0.0011

636 (20%)

2193.794

0.0002

0.0003

43 (1%)

2104.814

0.0000

0.0000

1074

4 versus 6

198 (6%)

145.625

0.0023

0.0031

255 (8%)

1724.236

0.0002

0.0002

17 (1%)

74.372

0.0046

0.0061

470

Total number of transcripts

1684

   

1427

   

147

   

3258

  1. The percentage contribution to female and male differentially expressed transcripts are indicated in parentheses. The fold-change, p value and false-discovery rate p value (FDR p value) are also indicated as averaged values for the time point.
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