Table 1 Time series counts and classifications across saliva omics for the various time frames.
From: Longitudinal saliva omics responses to immune perturbation: a case study
Time frames | mRNA | protein | EV GENCODE | EV piRNA | EV miRNA | EV taxa | EV rRNA taxa | Total |
---|---|---|---|---|---|---|---|---|
A. TFH1 | ||||||||
Total series | 15,621 | 724 | 55,971 | 589 | 258 | 353 | 1015 | 74,531 |
Total classed | 5781 | 671 | 27,684 | 434 | 113 | 409 | 280 | 35,372 |
Lag 1 | 1085 | 664 | 5328 | 145 | 84 | 224 | 125 | 7655 |
Spike Max | 6 | 6 | 7767 | 72 | 7 | 0 | 1 | 7859 |
Spike Min | 3597 | 0 | 11,328 | 23 | 14 | 148 | 18 | 15,128 |
Other lags | 1093 | 1 | 3261 | 194 | 8 | 37 | 136 | 4730 |
B. TFH2 | ||||||||
Total series | 7493 | 956 | 55,499 | 312 | 142 | 218 | 711 | 65,331 |
Total classed | 2707 | 252 | 21,981 | 224 | 63 | 328 | 184 | 25,739 |
Lag 1 | 481 | 164 | 8638 | 104 | 29 | 232 | 126 | 9774 |
Spike Max | 2 | 1 | 5762 | 31 | 2 | 0 | 0 | 5798 |
Spike Min | 1685 | 2 | 4926 | 19 | 24 | 69 | 10 | 6735 |
Other lags | 539 | 85 | 2655 | 70 | 8 | 27 | 48 | 3432 |
\(\mathbf{C}. TF \Delta\) | ||||||||
Total series | 7311 | 759 | 58,596 | 275 | 140 | 212 | 682 | 67,975 |
Total classed | 1200 | 441 | 16,517 | 191 | 60 | 227 | 179 | 18,815 |
Lag 1 | 369 | 433 | 6490 | 91 | 56 | 169 | 95 | 7703 |
Spike Max | 3 | 1 | 2947 | 6 | 0 | 0 | 0 | 2957 |
Spike Min | 2 | 4 | 2427 | 0 | 0 | 2 | 0 | 2435 |
Other lags | 826 | 3 | 4653 | 94 | 4 | 56 | 84 | 5720 |
D. TFD | ||||||||
Total series | 8155 | 662 | 58,863 | 354 | 218 | 307 | 841 | 69,400 |
Total classed | 3762 | 169 | 22,146 | 296 | 30 | 418 | 273 | 27,094 |
Lag 1 | 439 | 38 | 5567 | 92 | 1 | 180 | 126 | 6443 |
Spike Max | 2 | 3 | 5271 | 18 | 0 | 0 | 0 | 5294 |
Spike Min | 2248 | 1 | 5953 | 7 | 11 | 165 | 11 | 8396 |
Other lags | 1073 | 127 | 5355 | 179 | 18 | 73 | 136 | 6961 |