Table 2 Sequencing information for each assembly method (HiSeq with metaSPAdes, hybrid with metaSPAdes and combined HiSeq/MinION datasets, MinION with Canu).
From: MinION sequencing from sea ice cryoconites leads to de novo genome reconstruction from metagenomes
Assembly type | Sequencing data (Gbp) | Number of contigs | Average contig length (bp) | Number of contigs > 50,000 bp | Number of coding sequences classified by JGI | Total number of genes present | MAGs produced |
|---|---|---|---|---|---|---|---|
HiSeq | 22.9 | 2,197,534 | 1067 | 20 | 378,987 | 382,480 | 37 |
Hybrid | N/A | 2,159,929 | 1163 | 48 | 397,048 | 400,814 | 44 |
MinION | 1.2 | 3741 | 6734 | 36 | 48,475 | 49,539 | 4 |
