Figure 3 | Scientific Reports

Figure 3

From: Whole genome sequencing and protein structure analyses of target genes for the detection of Salmonella

Figure 3

Phylogenetic tree of 39 Salmonella ser. Heidelberg isolates. Using core SNPs determined by FDA CFSAN SNP pipeline, the tree was constructed under the GTR-CAI model of FASTree 2. The analysis involved 19–95 total SNP positions. Clades and subclades are indicated in colors (A, blue; B, red; and C, green) with numbers of total isolates in each clade or subclade in parentheses. Isolates sourced from chicken and clustered in subclade B2 are highlighted in red, the rest were from egg samples.

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