Table 1 SARS-CoV-2samples used for the phylogenetic analysis.

From: Detailed phylogenetic analysis tracks transmission of distinct SARS-COV-2 variants from China and Europe to West Africa

Region

Name

Accession

Date

Clade

West Africa

hCoV-19/Gambia/GC19-029/2020

EPI_ISL_428857

4/20/2020

GH

hCoV-19/Senegal/611/2020

EPI_ISL_420076

3/20/2020

GH

hCoV-19/Senegal/003/2020

EPI_ISL_418206

2/28/2020

GH

hCoV-19/Senegal/016/2020

EPI_ISL_418207

3/2/2020

GH

hCoV-19/Senegal/026/2020

EPI_ISL_418209

3/3/2020

GH

hCoV-19/Senegal/020/2020

EPI_ISL_418208

3/4/2020

GH

hCoV-19/Senegal/382/2020

EPI_ISL_420073

3/19/2020

GH

hCoV-19/Senegal/370/2020

EPI_ISL_420072

3/18/2020

GH

hCoV-19/Nigeria/OY008-CV29/2020

EPI_ISL_455429

3/27/2020

GH

hCoV-19/Nigeria/KW017-CV24/2020

EPI_ISL_455362

4/10/2020

GH

hCoV-19/Ghana/2333_S5/2020

EPI_ISL_422394

3/27/2020

GH

hCoV-19/Ghana/2986_S10/2020

EPI_ISL_422401

3/31/2020

GH

hCoV-19/Ghana/1622_S2/2020

EPI_ISL_422384

3/24/2020

GH

hCoV-19/Nigeria/OS060-CV9/2020

EPI_ISL_455419

3/29/2020

GH

hCoV-19/Senegal/610/2020

EPI_ISL_420075

3/20/2020

GH

hCoV-19/Senegal/328/2020

EPI_ISL_420071

3/17/2020

GH

hCoV-19/Senegal/640/2020

EPI_ISL_420079

3/20/2020

GH

hCoV-19/Gambia/GC19-015/2020

EPI_ISL_428855

3/17/2020

GR

hCoV-19/Ghana/2914_S8/2020

EPI_ISL_422399

3/30/2020

GR

hCoV-19/Nigeria/NG57752/2020

EPI_ISL_462992

2020-03

GR

hCoV-19/Ghana/1565_S13/2020

EPI_ISL_422404

3/24/2020

GR

hCoV-19/Nigeria/Lagos01/2020

EPI_ISL_413550

2/27/2020

GR

hCoV-19/Senegal/315/2020

EPI_ISL_420070

3/17/2020

G

hCoV-19/Senegal/600/2020

EPI_ISL_420074

3/20/2020

G

hCoV-19/Senegal/073/2020

EPI_ISL_418210

3/10/2020

G

hCoV-19/Senegal/082/2020

EPI_ISL_418211

3/11/2020

G

hCoV-19/Senegal/087/2020

EPI_ISL_418212

3/11/2020

G

hCoV-19/Senegal/094/2020

EPI_ISL_418213

3/12/2020

G

hCoV-19/Senegal/119/2020

EPI_ISL_418215

3/12/2020

G

hCoV-19/Ghana/2853_S7/2020

EPI_ISL_422398

3/29/2020

G

hCoV-19/Senegal/139/2020

EPI_ISL_418217

3/13/2020

G

hCoV-19/Ghana/2944_S9/2020

EPI_ISL_422400

3/30/2020

G

hCoV-19/Ghana/1659_S14/2020

EPI_ISL_422405

3/25/2020

G

hCoV-19/Senegal/102/2020

EPI_ISL_418214

3/12/2020

G

hCoV-19/Senegal/618/2020

EPI_ISL_420077

3/20/2020

S

hCoV-19/Senegal/136/2020

EPI_ISL_418216

3/13/2020

S

hCoV-19/Senegal/620/2020

EPI_ISL_420078

3/20/2020

S

hCoV-19/Ghana/1651_S3/2020

EPI_ISL_422387

3/25/2020

S

hCoV-19/Ghana/2850_S15/2020

EPI_ISL_422406

3/29/2020

S

hCoV-19/Ghana/2828_S6/2020

EPI_ISL_422397

3/29/2020

S

hCoV-19/Ghana/3177_S12/2020

EPI_ISL_422403

3/30/2020

S

hCoV-19/Ghana/3176_S11/2020

EPI_ISL_422402

3/30/2020

S

hCoV-19/Nigeria/OS030-CV5/2020

EPI_ISL_455415

3/29/2020

S

hCoV-19/Nigeria/OS085-CV14/2020

EPI_ISL_455424

3/29/2020

S

hCoV-19/Nigeria/OS055-CV8/2020

EPI_ISL_455418

3/29/2020

S

hCoV-19/Nigeria/OS070-CV11/2020

EPI_ISL_455422

3/29/2020

S

hCoV-19/Nigeria/OS075-CV12/2020

EPI_ISL_455423

3/29/2020

S

hCoV-19/Nigeria/OS122-CV18/2020

EPI_ISL_455426

3/29/2020

S

hCoV-19/Nigeria/OS125-CV20/2020

EPI_ISL_455427

3/29/2020

S

hCoV-19/Gambia/GC19-026/2020

EPI_ISL_428856

3/21/2020

V

hCoV-19/Nigeria/OG007-CV22/2020

EPI_ISL_455412

3/29/2020

V

hCoV-19/Nigeria/OY045A-CV35/2020

EPI_ISL_455431

4/2/2020

V

hCoV-19/Nigeria/OS016-CV3/2020

EPI_ISL_455413

3/27/2020

V

hCoV-19/Senegal/306/2020

EPI_ISL_420069

3/17/2020

L

hCoV-19/Ghana/2230_S4/2020

EPI_ISL_422390

3/25/2020

L

hCoV-19/Nigeria/OY035-CV34/2020

EPI_ISL_455430

4/2/2020

L

hCoV-19/Ghana/1513_S1/2020

EPI_ISL_422382

3/24/2020

L

hCoV-19/Nigeria/OS029-CV4/2020

EPI_ISL_455414

3/29/2020

L

hCoV-19/Nigeria/OS116-CV17/2020

EPI_ISL_455425

3/29/2020

L

hCoV-19/Nigeria/NG02/2020

EPI_ISL_450507

4/9/2020

L

Others

hCoV-19/France/HF1463/2020

EPI_ISL_429968

2/21/2020

GH

hCoV-19/England/SHEF-BFD27/2020

EPI_ISL_416737

3/3/2020

GR

hCoV-19/Brazil/SPBR-13/2020

EPI_ISL_416035

3/5/2020

GR

hCoV-19/Austria/CeMM0045/2020

EPI_ISL_437932

2/24/2020

GR

hCoV-19/Netherlands/Berlicum_1363564/2020

EPI_ISL_413565

2/24/2020

GR

hCoV-19/Italy/CDG1/2020

EPI_ISL_412973

2/20/2020

G

hCoV-19/Germany/BavPat1/2020

EPI_ISL_406862

1/28/2020

G

hCoV-19/Italy/PV-5314-N/2020

EPI_ISL_451307

2/21/2020

G

hCoV-19/Luxembourg/LNS0000001/2020

EPI_ISL_419562

2/29/2020

G

hCoV-19/DRC/3632/2020

EPI_ISL_447607

4/23/2020

G

hCoV-19/HongKong/HKU-908a/2020

EPI_ISL_434569

1/27/2020

V

hCoV-19/DRC/3632/2020

EPI_ISL_447607

4/23/2020

V

hCoV-19/Wuhan-Hu-1/2019

EPI_ISL_402125

12/31/2019

L

hCoV-19/USA/CA2/2020

EPI_ISL_406036

1/22/2020

L

hCoV-19/Wuhan/WH01/2019

EPI_ISL_406798

12/26/2019

L

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