Table 2 Identification and expression analysis of rubber biosynthesis associated genes.
Gene name | Contig | logFC | FDR | Ctrl_TMM | Drought_TMM | Accession no | Annotation |
|---|---|---|---|---|---|---|---|
Mevalonate (MVA) pathway | |||||||
ACAT1 | PaTc_041029 |  − 2.52 | 0.06 | 409.38 | 72.76 | XP_024979490.1 | Acetoacetyl-CoA thiolase |
ACAT1 | PaTc_041027 |  − 2.67 | 0.14 | 2.66 | 0.42 | XP_024979490.1 | Acetoacetyl-CoA thiolase |
ACAT1 | PaTc_041030 |  − 2.58 | 0.82 | 0.95 | 0.18 | XP_024979490.1 | Acetoacetyl-CoA thiolase |
ACAT2 | PaTc_085048 |  − 0.20 | 1.00 | 49.05 | 41.85 | XP_022011037.1 | Acetoacetyl-CoA thiolase |
ACAT3 | PaTc_107572 |  − 3.32 | 0.11 | 47.83 | 4.83 | OTG07344.1 | Acetoacetyl-CoA thiolase |
HMGS1 | PaTc_097206 |  − 1.17 | 0.74 | 336.44 | 145.22 | XP_021969097.1 | 3-Hydroxy-3-methylglutaryl-coenzyme A synthase |
HMGS1 | PaTc_097204 |  − 1.51 | 0.73 | 4.87 | 1.69 | XP_021969097.1 | 3-Hydroxy-3-methylglutaryl-coenzyme A synthase |
HMGS2 | PaTc_111123 | 0.55 | 0.95 | 1.74 | 2.56 | XP_022022159.1 | 3-Hydroxy-3-methylglutaryl-coenzyme A synthase |
HMGR1 | PaTc_112447 |  − 4.34 | 0.00 | 849.24 | 42.90 | XP_022016011.1 | 3-Hydroxy-3-methylglutaryl-coenzyme A reductase |
HMGR2 | PaTc_099724 |  − 2.92 | 0.00 | 104.71 | 13.74 | ASJ80969.1 | 3-Hydroxy-3-methylglutaryl-coenzyme A reductase |
HMGR3 | PaTc_042319 | 0.91 | 0.87 | 8.50 | 16.58 | XP_021981154.1 | 3-Hydroxy-3-methylglutaryl-coenzyme A reductase |
HMGR4 | PaTc_036263 | 0.25 | 1.00 | 0.86 | 1.04 | XP_024990111.1 | 3-Hydroxy-3-methylglutaryl-coenzyme A reductase |
HMGR5 | PaTc_071662 |  − 3.39 | 0.06 | 55.53 | 5.59 | XP_024974039.1 | 3-Hydroxy-3-methylglutaryl-coenzyme A reductase |
MK | PaTc_011919 |  − 1.45 | 0.07 | 38.06 | 13.60 | XP_021982774.1 | mevalonate-5-kinase |
PMK | PaTc_091190 | 0.00 | 1.00 | 6.32 | 6.37 | XP_022029028.1 | phosphomevalonate kinase |
PMK | PaTc_087171 |  − 0.24 | 1.00 | 8.45 | 7.15 | XP_021970137.1 | phosphomevalonate kinase |
PMK | PaTc_140495 | 0.11 | 1.00 | 3.43 | 3.70 | XP_022029028.1 | phosphomevalonate kinase |
PMK | PaTc_140494 |  − 0.88 | 0.81 | 3.74 | 2.01 | XP_022029028.1 | phosphomevalonate kinase |
MDD | PaTc_032360 |  − 0.67 | 0.95 | 249.84 | 155.84 | XP_021993996.1 | Diphosphomevalonate decarboxylase |
MDD | PaTc_032353 |  − 0.30 | 1.00 | 3.12 | 2.54 | XP_021993996.1 | Diphosphomevalonate decarboxylase |
IDI | PaTc_051129 |  − 1.78 | 0.02 | 29.22 | 8.46 | XP_022033582.1 | isopentenyl diphosphate isomerase |
IDI | PaTc_083602 |  − 2.48 | 0.02 | 40.89 | 7.24 | XP_021982603.1 | isopentenyl diphosphate isomerase |
IDI | PaTc_208250 | 0.06 | 1.00 | 8.02 | 7.96 | XP_024990050.1 | isopentenyl diphosphate isomerase |
IDI | PaTc_208249 | 0.95 | 0.85 | 2.20 | 4.25 | XP_024990050.1 | isopentenyl diphosphate isomerase |
Rubber particle (RP) associated | |||||||
AOS1 | PaTc_229190 |  − 1.29 | 0.71 | 1138.35 | 445.44 | XP_021983640.1 | Allene oxide synthase |
AOSL2 | PaTc_122848 | 0.87 | 0.81 | 25.92 | 47.27 | XP_021983640.1 | Allene oxide synthase |
AOSL3 | PaTc_122845 |  − 0.42 | 1.00 | 34.35 | 25.58 | XP_022034250.1 | Allene oxide synthase |
CBP | PaTc_149493 |  − 1.25 | 0.71 | 246.74 | 100.84 | ATD87120.1 | CPT-binding protein |
CPT1 | PaTc_044561 |  − 0.41 | 1.00 | 2.73 | 1.99 | ATD87115.1 | cis-prenyltransferases |
CPT2 | PaTc_069159 | 1.63 | 0.89 | 1.76 | 5.09 | ATD87118.1 | cis-prenyltransferases |
CPT3 | PaTc_140080 |  − 0.28 | 1.00 | 0.32 | 0.27 | ATD87116.1 | cis-prenyltransferases |
CPT3 | PaTc_140079 | n.a | n.a | 0.18 | 0.09 | n.a | cis-prenyltransferases |
CPT3 | PaTc_140078 |  − 3.26 | 0.01 | 869.51 | 90.99 | ATD87116.1 | cis-prenyltransferases |
SRPP1 | PaTc_109994 | 1.16 | 0.19 | 192.50 | 421.14 | AAQ11374.1 | small rubber particle protein |
SRPP2 | PaTc_109993 | 1.51 | 0.94 | 0.70 | 2.15 | AAQ11374.1 | small rubber particle protein |
SRPP3 | PaTc_141609 | 0.92 | 0.53 | 159.87 | 298.83 | AAQ11374.1 | small rubber particle protein |
FPPS1 | PaTc_059300 |  − 0.80 | 0.94 | 20.41 | 11.89 | O24241.1 | farnesyl pyrophosphate synthase |
FPPS2 | PaTc_024209 |  − 0.07 | 1.00 | 26.16 | 24.70 | O24242.1 | farnesyl pyrophosphate synthase |
FPPS | PaTc_059294 |  − 1.80 | 0.41 | 1.14 | 0.33 | O24241.1 | farnesyl pyrophosphate synthase |
FPPS | PaTc_024210 | 0.00 | 1.00 | 2.20 | 2.18 | O24242.1 | farnesyl pyrophosphate synthase |
FPPS | PaTc_024207 | n.a | n.a | 0.03 | 0.24 | O24242.1 | farnesyl pyrophosphate synthase |
Selected terpenoids pathway | |||||||
GPPS | PaTc_108154 |  − 0.98 | 0.90 | 1.96 | 0.94 | XP_022027531.1 | geranyl pyrophosphate synthase |
GPPS | PaTc_108145 |  − 2.39 | 0.55 | 1.44 | 0.26 | XP_022027531.1 | geranyl pyrophosphate synthase |
GPPS | PaTc_108152 | 1.50 | 0.86 | 0.55 | 1.57 | XP_022027531.1 | geranyl pyrophosphate synthase |
GPPS | PaTc_222834 | 1.38 | 0.90 | 0.68 | 1.74 | XP_022027531.1 | geranyl pyrophosphate synthase |
GPPS | PaTc_222833 |  − 0.45 | 0.97 | 6.90 | 4.98 | XP_022027531.1 | geranyl pyrophosphate synthase |
SQS | PaTc_219827 |  − 2.84 | 0.12 | 54.14 | 7.67 | XP_022013547.1 | squalene synthase |
GGPPS | PaTc_023109 |  − 2.86 | 0.83 | 0.63 | 0.92 | XP_022026732.1 | geranylgeranyl pyrophosphate synthase |
GGPPS | PaTc_023108 | n.a | n.a | 0.30 | 0.34 | XP_022026732.1 | geranylgeranyl pyrophosphate synthase |
GGPPS | PaTc_003194 | n.a | n.a | 0.45 | 0.10 | XP_022026732.1 | geranylgeranyl pyrophosphate synthase |
