Table 1 Summary of paired-end sequencing data (2 × 100 bp) and de novo transcriptome assembly statistics for Ae. speltoides acc. pau3809, T. aestivum cv. PBW725 and T. durum cv. PDW274.
Feature | Aegilops speltoides acc. pau3809 | Triticum aestivum cv. PBW725 | Triticum durum cv. PDW274 |
---|---|---|---|
Total number of raw paired-end reads | 16,991,059 | 21,158,755 | 18,808,576 |
Paired-end reads obtained after filtering | 13,397,450 (78.85%) | 16,480,554 (77.89%) | 13,824,303 (73.50%) |
Number of trinity transcripts | 113,157 | 121,466 | 109,827 |
Number of trinity ‘genes’ | 74,946 | 76,404 | 68,873 |
GC content (%) | 47.57 | 48.11 | 48.22 |
Contig N50 (bp) | 1409 | 1398 | 1004 |
Average contig length (bp) | 809.01 | 850.16 | 796.23 |