Figure 7
From: An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection
Analysis of xisRNA duplex sequences similarities. (A) Sequence logo representation of a multiple alignment of major antisense xisRNA duplex reads sequences belonging to the clusters defined in Supplementary Fig. S11. The sketches of InterPro domain hits in panel (B), (C) and (D) for respectively xisRNA001, xisRNA065 and xisRNA010 cis-gene products are representative and illustrative of the observation that xisRNA duplex coding sequences consistently coincide with a specific kinase domain protein regions. (E) Multiple protein subregion sequences alignments for a subset of 6 individual clusters from those defined in Supplementary Fig. S12 (the clusters labels are consistent). (F) Sequence logo representation of a multiple alignment of the 47 amino acid sequences displayed in (E). The active site residues described for the NCBI CDD STKc_IRAK family (accession cd14066) are highlighted with hash symbols.
