Table 1 Average ScanFold metrics and extracted motifs for each strand.

From: In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation

Type & segment

zavg & std dev

% zavg/nt

% zavg/nt

% zavg/nt

# < −2 motifs

(+ / −)

 < − 0 (+ / −)

 < − 1 (+ / −)

 < − 2 (+ / −)

(+ / −)

IAV 1

− 0.40 ± 0.98/− 0.44 ± 1.06

62.51/64.36

26.78/29.30

5.90/7.83

2/5

IAV 2

− 0.63 ± 1.20/− 0.63 ± 1.10

64.99/67.82

33.21/32.72

13.86/13.41

8/7

IAV 3

− 0.41 ± 1.05/− 0.26 ± 1.13

65.52/54.40

25.54/23.27

6.43/8.80

5/5

IAV 4

− 0.07 ± 0.84/− 0.42 ± 1.00

53.10/63.17

12.24/29.17

0.90/6.81

6/3

IAV 5

− 0.48 ± 1.05/− 0.62 ± 1.19

64.45/64.18

27.66/34.51

9.96/17.15

7/4

IAV 6

− 0.33 ± 1.18/− 0.40 ± 1.13

54.33/58.11

25.19/28.36

8.89/11.13

2/5

IAV 7

− 1.19 ± 1.23/− 0.69 ± 1.23

83.04/71.26

51.76/36.01

26.87/15.42

5/5

IAV 8

− 1.21 ± 1.42/− 1.24 ± 1.22

79.64/84.18

55.25/57.72

28.40/25.68

6/6

IBV 1

− 0.42 ± 1.20/− 0.69 ± 1.15

61.49/69.41

30.46/40.28

10.45/14.01

8/6

IBV 2

− 0.53 ± 1.03/− 0.71 ± 1.10

70.28/74.20

32.68/36.42

8.07/12.08

2/6

IBV 3

− 0.54 ± 0.96/− 0.64 ± 1.07

69.50/71.32

32.66/39.52

6.43/8.54

1/5

IBV 4

− 0.77 ± 1.05/− 0.35 ± 1.04

75.55/60.35

37.15/24.11

12.71/8.11

2/2

IBV 5

− 0.85 ± 1.08/− 0.66 ± 0.91

74.56/76.66

42.45/32.23

16.03/7.96

4/2

IBV 6

− 0.16 ± 1.13/− 0.57 ± 1.06

52.43/69.05

17.80/31.85

7.86/9.25

2/4

IBV 7

− 0.83 ± 1.05/− 0.58 ± 1.02

77.99/71.83

41.32/38.53

12.50/7.56

3/1

IBV 8

− 0.43 ± 1.11/− 0.46 ± 1.16

63.97/64.07

27.33/29.89

8.90/11.57

1/2

ICV 1

− 0.33 ± 1.02/− 0.39 ± 0.97

62.39/64.44

27.09/23.17

4.99/6.95

2/2

ICV 2

− 0.39 ± 0.97/− 0.64 ± 0.94

64.44/73.51

23.17/32.59

6.95/8.86

5/2

ICV 3

− 0.77 ± 1.18/− 0.60 ± 1.07

70.88/67.44

40.26/31.54

17.34/12.31

12/4

ICV 4

− 0.95 ± 1.03/− 0.91 ± 1.00

80.66/80.86

49.28/46.16

14.79/14.74

0/5

ICV 5

− 0.77 ± 1.21/− 0.56 ± 1.32

75.12/62.38

38.57/29.03

15.11/9.42

7/3

ICV 6

− 0.55 ± 1.34/− 0.66 ± 1.20

59.75/70.88

30.16/30.82

15.93/14.89

4/3

ICV 7

− 0.78 ± 0.93/− 0.69 ± 1.01

79.53/74.88

40.07/29.17

9.19/13.36

1/3

  1. “% zavg/nt” is the percentage of nucleotides that had zavg scores below the given threshold. “# < −2 Motifs” is the number of extracted motifs for each strand below the −2 z− score threshold, totaling 185.
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