Table 3 Comparison of minor allele frequency derived from IndiGenome and INDEX-DB GWAS with current study.
Genotype | Allele | MAF frequency current study | MAF from IndiGenome | MAF from INDEX-DB | P-value |
|---|---|---|---|---|---|
B3GALTL (rs9542236) | C | 28 (0.21) | 0.18 | NA | 0.41 |
LIPC (rs920915) | G | 88 (0.67) | 0.73 | NA | 0.38 |
ADAMTS9 (rs6795735) | T | 95 (0.73) | 0.77 | NA | 0.49 |
APOE (rs769449) | A | 9 (0.07) | 0.08 | 0.083 (GnomAD) | 0.71* |
HTRA1 (rs11200638) | A | 86 (0.67) | 0.34 | NA | < 0.001 |
TIMP3 (rs5749482) | C | 12 (0.08) | 0.15 | NA | 0.15 |
IER-3 (rs3130783) | A | 111 (0.91) | 0.91 | NA | 0.99 |
SLC16A8 (rs8135665) | T | 34 (0.27) | 0.19 | NA | 0.13 |
