Table 2 Top 10 CpG sites showing the largest fold change between patients and controls.
From: Longitudinal genome-wide DNA methylation changes in response to kidney failure replacement therapy
Gene symbol | Probe no. | PFDR | Fold change | |
---|---|---|---|---|
Controls vs dialysis baseline | D2HGDH | cg05385718 | 3.9 × 10–4 | 0.003 |
CDK6 | cg06688763 | 4.1 × 10–4 | 0.044 | |
AGAP3 | cg25417842 | 4.1 × 10–3 | 0.045 | |
PNKD | cg22712983 | 1.4 × 10–3 | 0.049 | |
HIVEP3 | cg12666727 | 2.1 × 10–4 | 0.05 | |
HSDL1 | cg08965527 | 1.0 × 10–4 | 34.8 | |
RNASEH2C | cg25294185 | 1.2 × 10–4 | 36.3 | |
ZNF562 | cg21610904 | 3.6 × 10–3 | 39.9 | |
CSGALNACT2 | cg26674752 | 1.1 × 10–4 | 71.3 | |
COL6A3 | cg23813394 | 7.8 × 10–3 | 776.2 | |
Controls vs dialysis 12 months | D2HGDH | cg05385718 | 8.1 × 10–3 | 0.007 |
PNKD | cg22712983 | 2.5 × 10–3 | 0.04 | |
EID2 | cg11976736 | 5.5 × 10–3 | 0.053 | |
AGAP3 | cg07429146 | 7.2 × 10–3 | 0.068 | |
ETS1 | cg24065451 | 8.7 × 10–4 | 0.076 | |
MRFAP1 | cg24475210 | 7.1 × 10–4 | 39 | |
GBX1 | cg04553410 | 6.8 × 10–4 | 41.9 | |
RNASEH2C | cg25294185 | 3.3 × 10–4 | 44.7 | |
ZNF224 | cg26649251 | 1.4 × 10–4 | 83.2 | |
– | cg12031275 | 7.4 × 10–3 | 288.5 | |
Controls vs KTx baseline | TTC15 | cg00257789 | 6.5 × 10–3 | 0.004 |
HLA-DRB5 | cg25372449 | 4.8 × 10–3 | 0.01 | |
PNKD | cg22712983 | 6.4 × 10–6 | 0.022 | |
PRKAG2 | cg06436185 | 1.4 × 10–6 | 0.022 | |
FXYD2 | cg01142676 | 1.8 × 10–6 | 0.027 | |
BCL11B | cg16452866 | 2.4 × 10–6 | 35.7 | |
NOSIP | cg21292909 | 3.3 × 10–7 | 38.4 | |
IQSEC1 | cg26692003 | 4.4 × 10–7 | 41.9 | |
DGKA | cg07679948 | 3.6 × 10–6 | 45.2 | |
RARG | cg13937905 | 4.9 × 10–6 | 54.3 | |
Controls vs KTx 12 months | SSH3 | cg22632840 | 1.5 × 10–4 | 0.044 |
– | cg13985485 | 3.5 × 10–3 | 0.054 | |
– | cg11799593 | 5.6 × 10–3 | 0.055 | |
HOXD13 | cg04415176 | 3.5 × 10–3 | 0.057 | |
– | cg20697025 | 1.9 × 10–3 | 0.062 | |
EHD1 | cg06154903 | 1 × 10–4 | 17.7 | |
ACOT7 | cg11699125 | 1.6 × 10–3 | 18.1 | |
LOC399815;FAM24B | cg10241347 | 3.6 × 10–4 | 19 | |
CDKL2 | cg05982271 | 6.5 × 10–3 | 19.3 | |
RDH10 | cg17662034 | 2.2 × 10–4 | 24 |