Figure 4

Barcodes of initial and re-infected participant samples. Patient ID (human) is shown along with date of sampling, Age, Neighborhood, Household (arbitrary alphabetical code), and barcode haplotype. SNP positions are indicated for the 24-SNP barcode. “N” indicates a position with two peaks—corresponding to both biallelic SNPs (mixed genotype), and an “X” indicates a reproducibly negative call. M/P genomic indicates monogenomic (M) or polygenomic (P) infections.