Table 4 Genetic diversity caculation of Orchidaceae plants based on candidate barcode sequences by the DnaSP v5 software.

From: The specific DNA barcodes based on chloroplast genes for species identification of Orchidaceae plants

Sequences

n

Nucleotide diversity

π

Neutrality tests

S

k

Eta

Hd

θ

Fu’s Fs

p-value

D

p-value

matK

3050

1288

3.12596

1523

0.9050

0.24339

0.07270

− 2.57476

< 0.05

− 1.84286

< 0.05

rbcL

643

259

15.997

322

0.9779

0.07155

0.02503

− 0.51015

> 0.10

− 1.92689

< 0.05

ndhF

234

233

13.952

340

0.9660

0.18546

0.04589

− 2.96843

< 0.05

− 2.37565

< 0.01

ycf1

384

906

95.110

1470

0.9921

0.17379

0.07339

0.25100

> 0.10

− 1.78584

< 0.05

matK + rbcL

372

559

54.729

821

0.9924

0.12616

0.05462

− 0.11121

> 0.10

− 1.75132

< 0.05

matK + ndhF

216

687

59.444

943

0.9853

0.12276

0.04604

− 1.32301

> 0.10

− 2.00131

< 0.05

matK + ycf1

378

1495

150.984

2314

0.9932

0.15463

0.06542

0.08057

> 0.10

− 1.79023

< 0.05

ndhF + ycf1

228

494

39.916

712

0.9740

0.15585

0.05191

− 1.47948

> 0.10

− 2.13392

< 0.01

  1. Eta Total number of mutations, n number of sequences, k Average number of nucleotide difference, S Number of segregating sites, θ nucleotide substitution rate, π nucleotide diversity, Hd haplotype diversity, Fu’s Fs is variation among different haplotypes in the population, D is the Tajima test statistic.