Table 2 The 20 top-ranked DNA methylation sites in the AOD versus HC group (a) and the LOD versus HC group (b).

From: Distinct epigenetic signatures between adult-onset and late-onset depression

ID

Fisher Ratio

HC average

AOD average

CHR

MAPINFO

UCSC_REFGENE_NAME

UCSC_REFGENE_GROUP

RELATION_TO_UCSC_CPG_ISLAND

(a)

cg15794987

3.85

0.954

0.937

8

6,534,897

   

cg07763047

3.71

0.046

0.025

5

160974837

GABRB2;GABRB2

5′UTR;5′UTR

Island

cg21347377

3.59

0.014

0.006

10

96,305,691

HELLS

1stExon

Island

cg17458347

3.53

0.099

0.083

1

42,928,946

  

Island

cg14567489

3.41

0.021

0.014

20

43,977,078

SDC4

TSS200

Island

cg02221310

3.33

0.013

0.004

13

41,363,578

SLC25A15;SLC25A15

5′UTR;1stExon

Island

cg16579770

3.29

0.934

0.917

16

72,058,938

DHODH

3′UTR

 

cg01320648

3.22

0.548

0.517

4

123091375

KIAA1109

TSS1500

 

cg05974695

3.19

0.026

0.017

11

130786536

SNX19

TSS200

Island

cg15525503

3.13

0.020

0.008

1

3,773,166

DFFB;KIAA0562

TSS1500;5′UTR

N_Shore

cg26655295

3.08

0.045

0.034

2

677,162

TMEM18

Body

Island

cg12867237

3.07

0.146

0.128

11

44,087,540

ACCS;ACCS

TSS200;TSS1500

Island

cg16234726

3.06

0.937

0.922

14

102099176

  

N_Shore

cg20452738

3.04

0.922

0.947

1

226828650

ITPKB

Body

N_Shore

cg23543123

2.99

0.023

0.013

4

48,485,569

SLC10A4;SLC10A4

5′UTR;1stExon

Island

cg22115465

2.91

0.983

0.979

7

2,170,343

MAD1L1;MAD1L1;MAD1L1

Body;Body;Body

 

cg04147027

2.90

0.030

0.022

6

82,462,442

FAM46A

TSS200

Island

cg15971980

2.89

0.571

0.676

6

150254442

   

cg24934561

2.89

0.064

0.055

1

3,663,902

KIAA0495

TSS200

Island

cg23531049

2.81

0.845

0.892

15

42,075,277

MAPKBP1;MAPKBP1

Body;Body

 

ID

Fisher Ratio

HC average

LOD average

CHR

MAPINFO

UCSC_REFGENE_NAME

UCSC_REFGENE_GROUP

RELATION_TO_UCSC_CPG_ISLAND

(b)

cg06557376

3.14

0.959

0.949

17

8,384,607

MYH10

Body

 

cg23854456

2.87

0.936

0.920

19

39,806,075

LRFN1

TSS200

S_Shore

cg09597022

2.46

0.884

0.855

6

33,288,332

DAXX;DAXX;DAXX;DAXX

Body;Body;Body;Body

N_Shore

cg04521026

2.21

0.958

0.948

2

240067196

HDAC4

Body

 

cg15390741

2.06

0.986

0.976

1

51,822,535

EPS15;EPS15

Body;Body

 

cg06034437

2.03

0.521

0.474

3

10,183,196

VHL;VHL

TSS200;TSS200

N_Shore

cg25996553

1.99

0.889

0.869

8

13,133,084

DLC1

Body

N_Shore

cg18394552

1.92

0.648

0.577

5

159428643

   

cg04262179

1.89

0.975

0.971

1

178482030

C1orf49;C1orf49;C1orf49;C1orf49

TSS200;TSS200;TSS200;TSS200

 

cg03473408

1.88

0.769

0.696

6

30,588,689

MRPS18B

Body

S_Shelf

cg27318635

1.83

0.949

0.937

16

3,781,749

CREBBP;CREBBP

Body;Body

S_Shore

cg16011480

1.78

0.151

0.139

10

97,667,594

C10orf131

TSS200

Island

cg27088822

1.75

0.799

0.752

12

121731226

CAMKK2;CAMKK2;CAMKK2;CAMKK2;CAMKK2;CAMKK2;CAMKK2

5′UTR;5′UTR;5′UTR;5′UTR;5′UTR;5′UTR;5′UTR

N_Shelf

cg13081381

1.72

0.480

0.502

13

82,264,192

   

cg01345727

1.71

0.759

0.695

13

52,734,018

NEK3;NEK3;NEK3;NEK3

TSS1500;TSS200;TSS200;TSS200

S_Shore

cg11855759

1.70

0.205

0.234

17

9,548,802

USP43

TSS200

Island

cg22389270

1.70

0.263

0.244

8

101162769

POLR2K

TSS200

 

cg11558107

1.69

0.932

0.912

15

60,700,124

   

cg20420249

1.66

0.808

0.758

1

172378938

DNM3;DNM3

3′UTR;3′UTR

 

cg15587947

1.66

0.861

0.844

19

10,220,948

PPAN-P2RY11;P2RY11;PPAN

Body;TSS1500;Body

Island

  1. AOD, adult-onset depression; HC, healthy controls; LOD, late-onset depression.