Table 2 The 20 top-ranked DNA methylation sites in the AOD versus HC group (a) and the LOD versus HC group (b).
From: Distinct epigenetic signatures between adult-onset and late-onset depression
ID | Fisher Ratio | HC average | AOD average | CHR | MAPINFO | UCSC_REFGENE_NAME | UCSC_REFGENE_GROUP | RELATION_TO_UCSC_CPG_ISLAND |
---|---|---|---|---|---|---|---|---|
(a) | ||||||||
cg15794987 | 3.85 | 0.954 | 0.937 | 8 | 6,534,897 | |||
cg07763047 | 3.71 | 0.046 | 0.025 | 5 | 160974837 | GABRB2;GABRB2 | 5′UTR;5′UTR | Island |
cg21347377 | 3.59 | 0.014 | 0.006 | 10 | 96,305,691 | HELLS | 1stExon | Island |
cg17458347 | 3.53 | 0.099 | 0.083 | 1 | 42,928,946 | Island | ||
cg14567489 | 3.41 | 0.021 | 0.014 | 20 | 43,977,078 | SDC4 | TSS200 | Island |
cg02221310 | 3.33 | 0.013 | 0.004 | 13 | 41,363,578 | SLC25A15;SLC25A15 | 5′UTR;1stExon | Island |
cg16579770 | 3.29 | 0.934 | 0.917 | 16 | 72,058,938 | DHODH | 3′UTR | |
cg01320648 | 3.22 | 0.548 | 0.517 | 4 | 123091375 | KIAA1109 | TSS1500 | |
cg05974695 | 3.19 | 0.026 | 0.017 | 11 | 130786536 | SNX19 | TSS200 | Island |
cg15525503 | 3.13 | 0.020 | 0.008 | 1 | 3,773,166 | DFFB;KIAA0562 | TSS1500;5′UTR | N_Shore |
cg26655295 | 3.08 | 0.045 | 0.034 | 2 | 677,162 | TMEM18 | Body | Island |
cg12867237 | 3.07 | 0.146 | 0.128 | 11 | 44,087,540 | ACCS;ACCS | TSS200;TSS1500 | Island |
cg16234726 | 3.06 | 0.937 | 0.922 | 14 | 102099176 | N_Shore | ||
cg20452738 | 3.04 | 0.922 | 0.947 | 1 | 226828650 | ITPKB | Body | N_Shore |
cg23543123 | 2.99 | 0.023 | 0.013 | 4 | 48,485,569 | SLC10A4;SLC10A4 | 5′UTR;1stExon | Island |
cg22115465 | 2.91 | 0.983 | 0.979 | 7 | 2,170,343 | MAD1L1;MAD1L1;MAD1L1 | Body;Body;Body | |
cg04147027 | 2.90 | 0.030 | 0.022 | 6 | 82,462,442 | FAM46A | TSS200 | Island |
cg15971980 | 2.89 | 0.571 | 0.676 | 6 | 150254442 | |||
cg24934561 | 2.89 | 0.064 | 0.055 | 1 | 3,663,902 | KIAA0495 | TSS200 | Island |
cg23531049 | 2.81 | 0.845 | 0.892 | 15 | 42,075,277 | MAPKBP1;MAPKBP1 | Body;Body |
ID | Fisher Ratio | HC average | LOD average | CHR | MAPINFO | UCSC_REFGENE_NAME | UCSC_REFGENE_GROUP | RELATION_TO_UCSC_CPG_ISLAND |
---|---|---|---|---|---|---|---|---|
(b) | ||||||||
cg06557376 | 3.14 | 0.959 | 0.949 | 17 | 8,384,607 | MYH10 | Body | |
cg23854456 | 2.87 | 0.936 | 0.920 | 19 | 39,806,075 | LRFN1 | TSS200 | S_Shore |
cg09597022 | 2.46 | 0.884 | 0.855 | 6 | 33,288,332 | DAXX;DAXX;DAXX;DAXX | Body;Body;Body;Body | N_Shore |
cg04521026 | 2.21 | 0.958 | 0.948 | 2 | 240067196 | HDAC4 | Body | |
cg15390741 | 2.06 | 0.986 | 0.976 | 1 | 51,822,535 | EPS15;EPS15 | Body;Body | |
cg06034437 | 2.03 | 0.521 | 0.474 | 3 | 10,183,196 | VHL;VHL | TSS200;TSS200 | N_Shore |
cg25996553 | 1.99 | 0.889 | 0.869 | 8 | 13,133,084 | DLC1 | Body | N_Shore |
cg18394552 | 1.92 | 0.648 | 0.577 | 5 | 159428643 | |||
cg04262179 | 1.89 | 0.975 | 0.971 | 1 | 178482030 | C1orf49;C1orf49;C1orf49;C1orf49 | TSS200;TSS200;TSS200;TSS200 | |
cg03473408 | 1.88 | 0.769 | 0.696 | 6 | 30,588,689 | MRPS18B | Body | S_Shelf |
cg27318635 | 1.83 | 0.949 | 0.937 | 16 | 3,781,749 | CREBBP;CREBBP | Body;Body | S_Shore |
cg16011480 | 1.78 | 0.151 | 0.139 | 10 | 97,667,594 | C10orf131 | TSS200 | Island |
cg27088822 | 1.75 | 0.799 | 0.752 | 12 | 121731226 | CAMKK2;CAMKK2;CAMKK2;CAMKK2;CAMKK2;CAMKK2;CAMKK2 | 5′UTR;5′UTR;5′UTR;5′UTR;5′UTR;5′UTR;5′UTR | N_Shelf |
cg13081381 | 1.72 | 0.480 | 0.502 | 13 | 82,264,192 | |||
cg01345727 | 1.71 | 0.759 | 0.695 | 13 | 52,734,018 | NEK3;NEK3;NEK3;NEK3 | TSS1500;TSS200;TSS200;TSS200 | S_Shore |
cg11855759 | 1.70 | 0.205 | 0.234 | 17 | 9,548,802 | USP43 | TSS200 | Island |
cg22389270 | 1.70 | 0.263 | 0.244 | 8 | 101162769 | POLR2K | TSS200 | |
cg11558107 | 1.69 | 0.932 | 0.912 | 15 | 60,700,124 | |||
cg20420249 | 1.66 | 0.808 | 0.758 | 1 | 172378938 | DNM3;DNM3 | 3′UTR;3′UTR | |
cg15587947 | 1.66 | 0.861 | 0.844 | 19 | 10,220,948 | PPAN-P2RY11;P2RY11;PPAN | Body;TSS1500;Body | Island |