Table 2 Key transcripts differentially expressed in Amblema plicata brought into captivity.
Putative function | Log2 fold change | E-value | Gene Ontology (GO) terms |
|---|---|---|---|
Molecular chaperones | |||
Heat shock protein 90, putative | 7.44 | 0E0 | ATP binding |
Heat shock 70 kDa protein | 8.30 | 0E0 | ATP binding |
Heat shock 70 kDa protein 4 isoform X1 | 8.91 | 2.71E−39 | Integral component of membrane, ATP binding, nucleus |
Hypoxia up-regulated protein 1 | 6.84 | 4.73E−29 | Integral component of membrane, ATP binding |
Heat shock protein beta-1-like | 4.26 | 1.23E−26 | |
T-complex protein 1 subunit alpha | 8.04 | 3.43E−120 | |
T-complex protein 1 subunit beta | 7.85 | 4.26E−97 | ATP binding |
T-complex protein 1 subunit epsilon | 6.58 | 0E0 | |
T-complex protein 1 subunit zeta | 6.79 | 2.75E−170 | ATP binding |
T-complex protein 1 subunit theta-like | 5.07 | 4.02E−79 | |
Chaperonin CPN60-2, mitochondrial | 7.23 | 0E0 | Mitochondrion |
10 kDa heat shock protein, mitochondrial | 6.28 | 4.89E−21 | Mitochondrion |
Antioxidants | |||
Catalase | 5.30 | 0E0 | Oxidoreductase activity |
Glutathione S-transferase-like | 5.56 | 8.42E−33 | Transferase activity |
Peroxiredoxin-1 | 6.49 | 1.66E−53 | Oxidoreductase activity |
Superoxide dismutase | 7.50 | 1.37E−51 | |
Energy metabolism | |||
Triosephosphate isomerase | 5.25 | 2.01E−60 | |
Glyceraldehyde 3-phosphate dehydrogenase | 5.91 | 7.56E−131 | |
Enolase | 7.98 | 3.92E−162 | Nucleus |
Citrate synthase | 7.65 | 1.23E−136 | Transferase activity, mitochondrion |
Isocitrate dehydrogenase | 7.78 | 3.28E−35 | Oxidoreductase activity, mitochondrion |
Succinate dehydrogenase [ubiquinone] iron-sulfur Subunit, mitochondrial | 7.47 | 4.61E−114 | Oxidoreductase activity, mitochondrion |
Malate dehydrogenase | 8.72 | 3.81E−113 | Oxidoreductase activity |
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial | 7.59 | 0E0 | Oxidoreductase activity, mitochondrion |
Cytochrome c oxidase subunit 7C, mitochondrial-like | 6.67 | 2.63E−18 | Oxidoreductase activity, mitochondrion |
Alternative oxidase | 8.90 | 2.50E−144 | Integral component of membrane, oxidoreductase activity |
Immune response | |||
Big defensin 1 | − 3.56 | 3.24E−39 | Extracellular region, defense response to Gram-negative bacterium, defense response to Gram-positive bacterium |
Lysozyme | − 3.60 | 3.86E−66 | Extracellular region, defense response to Gram-negative bacterium, defense response to Gram-positive bacterium |
