Table 1 Description and results of rhabdoviruses isolates used in this study for specificity assessment.
From: A recombinase polymerase amplification assay for rapid detection of rabies virus
Isolates | Virus | Genus | Reference | Place of isolation | Year of isolation | Species | Rabies virus RT-qPCR | RABV-RPA | ||
|---|---|---|---|---|---|---|---|---|---|---|
Mean Cq valuea | SD | Mean Tt valueb | SD | |||||||
SA221203SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2011 | Mellivora capensi | 24.07 | 0.18 | 2.53 | 0.01 |
SA217694SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2011 | Canis lupus familiaris | 22.41 | 0.28 | 5.97 | 0.12 |
SA217695SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2011 | Canis lupus familiaris | 27.44 | 0.07 | 4.81 | 0.02 |
SA217750SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2011 | Canis lupus familiaris | 24.99 | 0.20 | 2.70 | 0.06 |
SH218152SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2011 | Homo sapiens | 18.82 | 0.06 | 2.26 | 0.25 |
SH177846SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2005 | Homo sapiens | 18.88 | 0.04 | 2.46 | 0.01 |
SA194858SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2008 | Canis lupus familiaris | 26.65 | 0.23 | 3.36 | 0.05 |
SA204014SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2010 | Canis lupus familiaris | 19.43 | 0.34 | 2.37 | 0.01 |
SA206776SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2010 | Canis lupus familiaris | 19.12 | 0.08 | 2.03 | 0.08 |
SA252888SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2013 | Canis lupus familiaris | 18.48 | 0.08 | 2.25 | 0.04 |
SA252913SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2013 | Canis lupus familiaris | 21.90 | 0.08 | 2.48 | 0.14 |
SA262037SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2013 | Canis lupus familiaris | 20.06 | 0.04 | 2.51 | 0.09 |
SA262503SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2014 | Canis lupus familiaris | 21.13 | 0.04 | 2.44 | 0.21 |
SA262518SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2014 | Canis lupus familiaris | 20.38 | 0.06 | 2.35 | 0.11 |
SA267115SEN | Rabies (RABV) | Lyssavirus | NRC-rabies IPD | Senegal | 2014 | Canis lupus familiaris | 19.48 | 0.13 | 2.29 | 0.15 |
DakAnB1094 | Kolongo (KOLV) | unassigned | JX276998 | CAR | 1970 | Euplectes afra | Neg | Neg | Neg | Neg |
AnY1307 | Mokola (MOKV) | Lyssavirus | NC_006429 | Cameroon | 1973 | Crocidura spp. | Neg | Neg | Neg | Neg |
AnB373d | Sandjimba (SJAV) | unassigned | JX277024 | CAR | 1970 | Acrocephalus schoenobaenus | Neg | Neg | Neg | Neg |
AnB4289 | Nasoule (NASV) | unassigned | JX277012 | CAR | 1973 | Andropadus virens | Neg | Neg | Neg | Neg |
AnD42443 | Lagos Bat (LBV) 3 | Lyssavirus | NC020807 | Senegal | 1985 | Eidolon helvum | Neg | Neg | Neg | Neg |
AnB672 | Lagos Bat (LBV) 2 | Lyssavirus | NRC-rabies IPD | CAR | 1974 | Micropteropus pusillus | Neg | Neg | Neg | Neg |
An K 6909 | Lagos Bat (LBV) 4 | Lyssavirus | NRC-rabies IPD | Guinea | 1985 | Nycteris gambiensis | Neg | Neg | Neg | Neg |
LBVNIG1956 | Lagos Bat (LBV) 6 | Lyssavirus | EF547431 | Nigeria | 1956 | Eidolon helvum | Neg | Neg | Neg | Neg |
DakHD763 | Le Dantec (LDV) | Ledantevirus | AY854650 | Senegal | 1965 | Homo sapiens | Neg | Neg | Neg | Neg |
DakAnD5314 | Keuraliba (KEUV) | Ledantevirus | JX276996 | Senegal | 1968 | Tatera kempi | Neg | Neg | Neg | Neg |
ArD89384 | Chandipura (CHNV) | Vesiculovirus | NRC-rabies IPD | Senegal | 1992 | Phlebotomus sp. | Neg | Neg | Neg | Neg |
SudAr1275 | Obodhiang (OBOV) | Ephemerovirus | HM856902 | Sudan | 1963 | Mansonia uniformis | Neg | Neg | Neg | Neg |
ArY31-65 | Nkolbisson (NKOV) | Ledantevirus | JX277015 | Cameroon | 1965 | Eretmapodites leucopus | Neg | Neg | Neg | Neg |
DakAnB439 | Garba (GARV) | unassigned | KM204982 | CAR | 1970 | Corythornis cristata | Neg | Neg | Neg | Neg |
SAAr1995 | Mossuril (MOSV) | Hapavirus | KM204993 | Mozambique | 1959 | Culex sitiens | Neg | Neg | Neg | Neg |
